View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_high_1 (Length: 539)
Name: NF19976_high_1
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 16573692 - 16573189
Alignment:
| Q |
11 |
aacaaacaaaacttaacacattttataaatcaacaaaagtttcgatacatggaggaataaaattaaaaacatggcgactaacatataaaatggttgttct |
110 |
Q |
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| T |
16573692 |
aacaaaccaaacttaacacattttataaatcaacaaaagtttcgatacatggaggaataaaattaaaa-catggcgactaacatatgaaatggttgttct |
16573594 |
T |
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| Q |
111 |
cacaaagttaccaatcaataatgagcactcaacaatcaactcctcctccaaatgaaccaacatatgtctacaactctaccttaacaccgaaacaacaatg |
210 |
Q |
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| T |
16573593 |
cacaaagttaccaatcaataatgagcactccacaatcaactcctcctccaaatgaaccaacatatgtctacaactctaccttaacaccgaaacaacaatg |
16573494 |
T |
|
| Q |
211 |
accccccttctacataattcagcatcatataagcaacattaacatttttataaataaccaatttatataatattttgaagtaatcccttaacactgatgg |
310 |
Q |
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| T |
16573493 |
accccccttctgcataattcagcatcatataagcaacattagcatttttataaataaccaatttatataatattttgaagtaatcccttaacactgatgg |
16573394 |
T |
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| Q |
311 |
aatctgctatagcaatgtggcattaaaatatttattttatcgtatccagaaggacttgattaattaactattcattttattttatgataaatgttttata |
410 |
Q |
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| T |
16573393 |
aatctgctgtagcaatgtggcaccaaaatatttattttatcgtatccagaagtacttgattaattaattattcattttattttatgataaaagttttata |
16573294 |
T |
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| Q |
411 |
gttagtaggtggttgtgtttagtttattgtaggtggttattgtcagattatgagtaaagggtgaaacacacgatatacaatatgtgttggaattaagttt |
510 |
Q |
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| T |
16573293 |
gttagtaggtggttgtgtttagtttattgtaggtggttattgtcagattat--------ggtgaaacacacgatatacaaaatgtgttggaattaagttt |
16573202 |
T |
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| Q |
511 |
cattagttagttc |
523 |
Q |
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||||||||||||| |
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| T |
16573201 |
cattagttagttc |
16573189 |
T |
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