View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_high_16 (Length: 244)
Name: NF19976_high_16
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 40085893 - 40086037
Alignment:
| Q |
1 |
aagccaaaaaagatattattaaatagaatggtaccaaggtaccaccaaaatgttgaactcatctaaaataattttgtggacccaattaaagccacgttat |
100 |
Q |
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| T |
40085893 |
aagccaaaaaagatattattaaatagaatggtaccaaagtaccaccaaaatgttgaactcatctaaagtaattttgtggatccaattaaagccacgttat |
40085992 |
T |
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| Q |
101 |
tctgaagcaactcactcatattttactccaatggtgcaactctaa |
145 |
Q |
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| T |
40085993 |
tctgaagcaactcactcatattttactccaatagtgcaactctaa |
40086037 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 11730623 - 11730659
Alignment:
| Q |
103 |
tgaagcaactcactcatattttactccaatggtgcaa |
139 |
Q |
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| T |
11730623 |
tgaagcaactcacttattttttactccaatggtgcaa |
11730659 |
T |
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