View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_high_19 (Length: 210)
Name: NF19976_high_19
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 39563382 - 39563200
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39563382 |
ggaagtcacaacttcatcaaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
39563283 |
T |
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| Q |
119 |
aaatcaaat-----caaactatagaatcagaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaatt |
196 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39563282 |
aaatcaaatcaaatcaaactatagaatcagaaaataatctactataactgttttaggagaaacaaagcacttatcaaagaatt |
39563200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 39537266 - 39537092
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | |
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| T |
39537266 |
ggaagtcaccacttcatctaaagaaagggaattggggattgattttgcagaggtgtacaaaaattcagagttatacaggtattttcactggtatgca--- |
39537170 |
T |
|
| Q |
119 |
aaatcaaatcaaactatagaatcagaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaatt |
196 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39537169 |
caatctaatcaaactatagaaatggaaaataatctactacaactgtttcaggagaaacaaagcacttatcaaagaatt |
39537092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 39367049 - 39367219
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
118 |
Q |
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|||||||||||||||||| |||||| ||| || ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39367049 |
ggaagtcacaacttcatccaaagaagtggagttacggattgattatgcagaggtgtacaaaaattcagagttatacaggtattttcacttgtatgaaatc |
39367148 |
T |
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| Q |
119 |
aaatcaaatcaaactatagaatcagaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaa |
194 |
Q |
| |
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||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39367149 |
aaatcaaat-----tatagaactagaaaataatctactacaactgtttcaggagaaacaaagcacttatcaaagaa |
39367219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 39354446 - 39354620
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| | |
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| T |
39354446 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagagttgtacaaaaattcagagttatacaggtattttcactggtaccca--- |
39354542 |
T |
|
| Q |
119 |
aaatcaaatcaaactatagaatcagaaaataatctactataactgtttcaggagaaacaaagcacttatcaaagaatt |
196 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
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| T |
39354543 |
caatctaatcaaactatagaaatggaaaataatctactataattgtttcaggataaacaaagcacttgtcaaagaatt |
39354620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 39339605 - 39339731
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
118 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||| | |
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| T |
39339605 |
ggaagtcacaaattcatctaaagaagtggaattggggattgattttgtagagttgtacaaaaattcagagttatacaggtattttcactggtat---aca |
39339701 |
T |
|
| Q |
119 |
aaatcaaatcaaactatagaatcagaaaat |
148 |
Q |
| |
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|||| ||||||||||||||| |||||||| |
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| T |
39339702 |
caatctaatcaaactatagaaccagaaaat |
39339731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 1084093 - 1083986
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
118 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||| |||||||| |||| |
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| T |
1084093 |
ggaagtcacagcttcatctaaggaagtggaattagggattgattttgcagaggtgtacaaaaactcacagttatacaggtattttcccttgtatgcaatc |
1083994 |
T |
|
| Q |
119 |
aaatcaaa |
126 |
Q |
| |
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||||||| |
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| T |
1083993 |
taatcaaa |
1083986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 39546726 - 39546619
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattttcacttgtatgaaatc |
118 |
Q |
| |
|
|||| |||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| |
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| T |
39546726 |
ggaaatcacaaattcatctaaagaagtagatttggggattgattttgcagaggtgtacaaaaattcagatttatacaggtattttcacttatatataatc |
39546627 |
T |
|
| Q |
119 |
aaatcaaa |
126 |
Q |
| |
|
||||||| |
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|
| T |
39546626 |
taatcaaa |
39546619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 39588469 - 39588386
Alignment:
| Q |
19 |
ggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattt |
102 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||| |||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
39588469 |
ggaagtcactacttcatctaaagaattagaattaggggttgattttgctgaggtgtacataaattcaacattatacaggtattt |
39588386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 1083746 - 1083714
Alignment:
| Q |
164 |
tttcaggagaaacaaagcacttatcaaagaatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
1083746 |
tttcaggagaaacaaagcacttatcaaagaatt |
1083714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 39339755 - 39339799
Alignment:
| Q |
152 |
ctactataactgtttcaggagaaacaaagcacttatcaaagaatt |
196 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| ||||| |
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|
| T |
39339755 |
ctactataattgtttcaggataaacaaagcacttatcaaggaatt |
39339799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 39621305 - 39621241
Alignment:
| Q |
38 |
aaagaaagggaattggggattgattttgcagaggtgtaccaaaattcagagttatacaggtattt |
102 |
Q |
| |
|
||||||| | |||||| |||||||||| | || |||||| |||||||||| |||||||||||||| |
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|
| T |
39621305 |
aaagaaatgcaattggagattgatttttctgaagtgtacaaaaattcagaattatacaggtattt |
39621241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 39339727 - 39339756
Alignment:
| Q |
78 |
aaaattcagagttatacaggtattttcact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
39339727 |
aaaattcagagttatacaggtattttcact |
39339756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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