View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_high_7 (Length: 411)
Name: NF19976_high_7
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 166 - 396
Target Start/End: Complemental strand, 28670374 - 28670146
Alignment:
| Q |
166 |
atggacacaaatcaagactcgcataaaaacaaacaatcacatcattgctcctacaatggatatacatacacaaaattcacataaacacaactaggggtta |
265 |
Q |
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| T |
28670374 |
atggacacaaatcaaaactcgcataaaaacaaacaatcacatcattgctcctacaatg-atatacatacacaaaattcacataaacacaactaggggtta |
28670276 |
T |
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| Q |
266 |
atatgataccccaaacaagaacactcactttagttgagttcaaagttatcaacactaagagaattgttgagaggtagaggaagtggtgaagttgaaactg |
365 |
Q |
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| T |
28670275 |
atatgataccccaaacaagaacactcactttagttgagttcaaagttatcaacacaaagagaattgttgagaggtagaggaagtggtgaagttgaaactg |
28670176 |
T |
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| Q |
366 |
gtgatatccccttaaaaagccaatatattgc |
396 |
Q |
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| T |
28670175 |
gtgatatcccctt-aaaagccaatatattgc |
28670146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 28670512 - 28670373
Alignment:
| Q |
9 |
acatcatcacaatcataattacttgataaaattctatatgttca------aatacaaatcactcaagaagtcatgaatcatgtttgcacaaaattcattc |
102 |
Q |
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| T |
28670512 |
acatcatcacaatcataattacttgataaaattctatatgttcatgttcaaatacaaatcactcaagaagtcatgaatcatgtttgcacaaaattcattc |
28670413 |
T |
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| Q |
103 |
aactattaccaagacatatacacatacatacacatagtat |
142 |
Q |
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| T |
28670412 |
aactattaccaagacatatacacatacatacacatagtat |
28670373 |
T |
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