View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_10 (Length: 357)
Name: NF19976_low_10
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 49552943 - 49553270
Alignment:
| Q |
19 |
gtttttaccatgtcttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttg |
118 |
Q |
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| T |
49552943 |
gtttttaccatgtcttccatgttgacagtaacagaagataagctttatgcattcaatgattgataatggagtaggttttcttgtcttccacgtgcctttg |
49553042 |
T |
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| Q |
119 |
gaatttccattcatttatataaatttagatactcgcgnnnnnnnnn---tcattgtaaatacatgaaactcaagcattgactacgactgtgctcttttaa |
215 |
Q |
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| T |
49553043 |
gaatttccattcatttat------ttagatacttgcgagaaaaaaaaaatcattgtaaatacatgaaactcaagcattgactacgaccgtgct--tttaa |
49553134 |
T |
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| Q |
216 |
acaggacattatattttcccaagcagaacacattctagattgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggctta |
315 |
Q |
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| T |
49553135 |
ataggacattatatcttcccaagcagaacacattctagattgtgcatgaaaacttcgatgaagagatagagggggtccagaacaatgagagatggggtta |
49553234 |
T |
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| Q |
316 |
tgtgaaggttacattggacaaaaatgttcttctcac |
351 |
Q |
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| T |
49553235 |
tgtgaaggttaacatggagaaaaatgttcttctcac |
49553270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 49537622 - 49537730
Alignment:
| Q |
19 |
gtttttaccatgtcttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttg |
118 |
Q |
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| T |
49537622 |
gtttttaccatgtcttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccatgtgcttttg |
49537721 |
T |
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| Q |
119 |
gaatttcca |
127 |
Q |
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| T |
49537722 |
gaatttcca |
49537730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 49538498 - 49538578
Alignment:
| Q |
247 |
attctagat-tgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggtta |
326 |
Q |
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| T |
49538498 |
attctagatctgtccatgaaaactttgatgaagagatagagggagtacagagcaatgagagatgggcttatgtgaaggtta |
49538578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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