View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_11 (Length: 354)
Name: NF19976_low_11
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 4599647 - 4599968
Alignment:
| Q |
16 |
atcatatgacccaataagacttttagattgctcttcagtgaactttggtaaatctttcacgaaagacaccatgcttgctggatactctccggttgtcagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4599647 |
atcatatgacccaataagacttttagattgctcttcagtgaactttggtaaatctttcacgaaagacaccatgtttgctggatactctccggttgtcagt |
4599746 |
T |
|
| Q |
116 |
ggctgtataaaccttcaaacagataaagaagattttaaattaccgtcacaattttgtcgcgatccatggttgtcgtagaaacggtnnnnnnngtatagtc |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | ||||| |
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| T |
4599747 |
ggctgtataaacctgcaaacagataaagaagattttaaattaccgtcacaattttgtcgtgatccatggttgtcgtagaaaaggtaaaaaaag--tagtc |
4599844 |
T |
|
| Q |
216 |
attaccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgcc |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4599845 |
attaccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgcc |
4599944 |
T |
|
| Q |
316 |
tattacaccgttttgagaatcctg |
339 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
4599945 |
tattacaccgttttgagaatcctg |
4599968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 4623975 - 4624295
Alignment:
| Q |
16 |
atcatatgacccaataagacttttagattgctcttcagtgaactttggtaa---atctttcacgaaagacaccatgcttgctggatactctccggttgtc |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||||||||||| |||||| |
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| T |
4623975 |
atcatatgacccaataagactcttagattgctctgcagtgaactttggtagcttatctcccacataagacaccaagcttgctggatactctcctgttgtc |
4624074 |
T |
|
| Q |
113 |
agtggctgtataaaccttcaaacagataaagaagattttaaat--taccgtcacaattttgtcgcgatccatggttgtcgtagaaacggtnnnnnnngta |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
4624075 |
agtggctgtataaacctgcaaacagataaagaagattttaaattatacggtcacaattttgtcgcgatccatggttgttgtagaaacggt-caaaaagta |
4624173 |
T |
|
| Q |
211 |
tagtcattaccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatcca |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
4624174 |
tagttgttaccatccaaacatgaaatcaagggcgtcttcagcggctttttgatctaatgggtcagttgagtatggtttaaaccagtgagagtttaatcca |
4624273 |
T |
|
| Q |
311 |
atgcctattacaccgttttgag |
332 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
4624274 |
atgcctattacaccattttgag |
4624295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 25038168 - 25038291
Alignment:
| Q |
16 |
atcatatgacccaataagacttttagattgctcttcagtgaactttggtaaatcttt---cacgaaagacaccatgcttgctggatactctccggttgtc |
112 |
Q |
| |
|
|||| |||| ||||||||| | |||||||||||| ||||||||||||||| || ||| ||||||||||||||| |||||||||||| |||||| |
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|
| T |
25038168 |
atcaaatgagccaataagaatcttagattgctctctggtgaactttggtaaacgatttcccacataagacaccatgcttgatggatactctcctgttgtc |
25038267 |
T |
|
| Q |
113 |
agtggctgtataaaccttcaaaca |
136 |
Q |
| |
|
|||||||| |||||||| |||||| |
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| T |
25038268 |
agtggctgcataaacctacaaaca |
25038291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 25017063 - 25017186
Alignment:
| Q |
16 |
atcatatgacccaataagacttttagattgctcttcagtgaactttggtaaatc-tttcacg--aaagacaccatgcttgctggatactctccggttgtc |
112 |
Q |
| |
|
|||| |||| |||||||| | ||||||||||||| ||||||||||||||| |||| || ||||||||||||||| |||||||||||| || ||| |
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|
| T |
25017063 |
atcaaatgagccaataagcatcttagattgctctttggtgaactttggtaaacgatttcccgcaaaagacaccatgcttaatggatactctcctgtggtc |
25017162 |
T |
|
| Q |
113 |
agtggctgtataaaccttcaaaca |
136 |
Q |
| |
|
| |||||| |||||||| |||||| |
|
|
| T |
25017163 |
aatggctgcataaacctgcaaaca |
25017186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 25017293 - 25017412
Alignment:
| Q |
215 |
cattaccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgc |
314 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||| ||||| |||||||||| || ||||| |||| ||||||||||||| |||| | |||| |
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|
| T |
25017293 |
cattaccatccaaacatgtaatcaagagcacgttcggcagcttgatgatctaatgtgtgatttgagaacggcagaaaccagtgagagcttaagctgatgc |
25017392 |
T |
|
| Q |
315 |
ctattacaccgttttgagaa |
334 |
Q |
| |
|
||||| ||| ||||||||| |
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|
| T |
25017393 |
ctattgaaccattttgagaa |
25017412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 25038397 - 25038521
Alignment:
| Q |
218 |
taccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgccta |
317 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||| |||||||| | ||| ||||| |||| |||||||||| | ||||| ||||||| |
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|
| T |
25038397 |
taccatccaaacatgaaatcaagagcacgttcggaagcttgatgatctaacgtgtcatttgagaacggcaaaaaccagtgacaatttaaggtgatgccta |
25038496 |
T |
|
| Q |
318 |
ttacaccgttttgagaatcctgatg |
342 |
Q |
| |
|
|| ||| ||||||||| ||||||| |
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|
| T |
25038497 |
ttgaaccattttgagaagcctgatg |
25038521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 18804828 - 18804667
Alignment:
| Q |
20 |
tatgacccaataagacttttagattgctcttcagtgaactttggtaaatctttcacgaaagacaccatgcttgctggatactctccggttgtcagtggct |
119 |
Q |
| |
|
||||||||||||||||| | | ||||||||| ||||||||||||||| || || |||||||||||||||||| |||||||| ||||||||||| | |
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|
| T |
18804828 |
tatgacccaataagactctcatattgctctttagtgaactttggtaatgtttccaaattagacaccatgcttgctgggtactctcctgttgtcagtggtt |
18804729 |
T |
|
| Q |
120 |
gtataaaccttcaaacagataaagaagattttaaattaccgtcacaattttgtcgcgatcca |
181 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||| | | ||||| ||||| |||||| |
|
|
| T |
18804728 |
gtaaaaacctgcaaacagataaagaagattttaaattactgccgcaattatgtcgtgatcca |
18804667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 18804486 - 18804423
Alignment:
| Q |
209 |
tatagtcattaccatccaaacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggt |
272 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||||| ||||| |||||||| |||| |
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|
| T |
18804486 |
tatagtcattaccatccaagcaataaatcaagggcacgttcggcagcttgatgatctaacgggt |
18804423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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