View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_13 (Length: 341)
Name: NF19976_low_13
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 41078046 - 41077738
Alignment:
| Q |
15 |
tagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgc |
114 |
Q |
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| T |
41078046 |
tagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgc |
41077947 |
T |
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| Q |
115 |
atacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgca |
214 |
Q |
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| T |
41077946 |
atacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgca |
41077847 |
T |
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| Q |
215 |
gcaaaatggaattataatctccattatgactcacttcttgaacccatggctaccatcatagacacatccaccacaccaagtaattgtggcaatccttccg |
314 |
Q |
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| T |
41077846 |
gcaaaatggaattataatctccattatgactcacttcttgaacccatggctaccatcatagacacatccaccacaccaagtaattgtggcaatccttccg |
41077747 |
T |
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| Q |
315 |
gttcaaact |
323 |
Q |
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| T |
41077746 |
gttcaaact |
41077738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 1217228 - 1217178
Alignment:
| Q |
57 |
catagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
107 |
Q |
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| T |
1217228 |
catagaatcaattaaagcatagcataataaaattcaagcacacatctcatg |
1217178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 4132034 - 4132091
Alignment:
| Q |
50 |
atgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
107 |
Q |
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| T |
4132034 |
atgataacatagaatcgattaaagcatagcacaatacaattcaagcacatatctcatg |
4132091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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