View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19976_low_14 (Length: 307)

Name: NF19976_low_14
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19976_low_14
NF19976_low_14
[»] chr1 (20 HSPs)
chr1 (16-307)||(38226795-38227085)
chr1 (18-109)||(27782107-27782198)
chr1 (19-109)||(27777761-27777851)
chr1 (214-307)||(38227064-38227157)
chr1 (214-307)||(38227136-38227229)
chr1 (165-275)||(17663556-17663666)
chr1 (165-275)||(17700313-17700423)
chr1 (175-252)||(27777591-27777668)
chr1 (175-252)||(27782293-27782370)
chr1 (111-252)||(27781234-27781383)
chr1 (217-285)||(38227211-38227279)
chr1 (214-285)||(27781006-27781077)
chr1 (214-280)||(27777494-27777560)
chr1 (214-280)||(27782401-27782467)
chr1 (16-98)||(17700150-17700232)
chr1 (74-109)||(27781404-27781439)
chr1 (16-109)||(21898928-21899020)
chr1 (189-280)||(21899130-21899221)
chr1 (16-74)||(17663772-17663830)
chr1 (214-250)||(27781080-27781116)
[»] chr4 (4 HSPs)
chr4 (144-275)||(35250109-35250240)
chr4 (16-109)||(35249944-35250037)
chr4 (189-275)||(51220010-51220096)
chr4 (189-275)||(51220797-51220883)
[»] chr7 (2 HSPs)
chr7 (189-272)||(440904-440987)
chr7 (195-227)||(440807-440839)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 38226795 - 38227085
Alignment:
Q  16 attagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgatacattac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226795 attagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgatacattac 38226894  T
Q  116 atgacaacgtcaagggtgtccatcccatcataatatcattcaaaatcacaaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactc 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||| ||||||| ||||||||||||    
T  38226895 atgacaacgtcaagggtgtccatcccatcataatatcattaaaaatcacaaaaaa-atataaactatgacgagacactaattggttttatcttcaaactc 38226993  T
Q  216 atcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgccttgattatcatcacttggaagctcgttca 307  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||    
T  38226994 atcacttggaagctcgttcaaatctaaattcttcacaacttttgaccctgattcagtttcaccttcattatcatcacttggaagttcgttca 38227085  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 27782107 - 27782198
Alignment:
Q  18 tagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgata 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27782107 tagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcgaattgctcaataattcatgatgata 27782198  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 27777851 - 27777761
Alignment:
Q  19 agaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgata 109  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777851 agaagattaagacaaatgtaaaagatggaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgata 27777761  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 38227064 - 38227157
Alignment:
Q  214 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgccttgattatcatcacttggaagctcgttca 307  Q
    |||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  38227064 tcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcaccttcattatcatcacttggaagctcgttca 38227157  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 38227136 - 38227229
Alignment:
Q  214 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgccttgattatcatcacttggaagctcgttca 307  Q
    |||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||    
T  38227136 tcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcaccttcattatcgtcacttgaaagctcgttca 38227229  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 17663666 - 17663556
Alignment:
Q  165 aaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccct 264  Q
    |||||| ||||||||  | | ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||| | |||||| ||||||||    
T  17663666 aaaaaaaatataaacataaaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccct 17663567  T
Q  265 aattcagtttc 275  Q
    ||||| |||||    
T  17663566 aattcggtttc 17663556  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 17700313 - 17700423
Alignment:
Q  165 aaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccct 264  Q
    |||||| ||||||||  | | ||||||||| ||| ||||||||||||| ||||||||||||||||| || ||||| | |||| | |||||| ||||||||    
T  17700313 aaaaaaaatataaacagaaaagaaacactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccct 17700412  T
Q  265 aattcagtttc 275  Q
    ||||| |||||    
T  17700413 aattcggtttc 17700423  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 27777668 - 27777591
Alignment:
Q  175 taaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcaca 252  Q
    ||||| ||||||| |||||| ||||||||||||||| | |||||||||| || |||||| ||||||||||||||||||    
T  27777668 taaaccaagacgagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcaca 27777591  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 27782293 - 27782370
Alignment:
Q  175 taaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcaca 252  Q
    ||||| ||||||| |||||| ||||||||||||||| | |||||||||| || |||||| ||||||||||||||||||    
T  27782293 taaaccaagacgagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcaca 27782370  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 27781383 - 27781234
Alignment:
Q  111 attacatgacaacgtcaagggtgtccatcccat--------cataatatcattcaaaatcacaaaaaagatataaactaagacgaaacactagttggttt 202  Q
    ||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||  |||||||||||||||||||||| || |||  |   ||    
T  27781383 attacatgacaacatcaagggtatccatcccataaaaaattcataatatcattcaaaatcattaaaaagatataaactaagacgagacgctaaatatctt 27781284  T
Q  203 catcttcaaactcatcacttggaagctcgtttaaatctaaattcttcaca 252  Q
    |||||||||| | ||  ||||||||| ||||  |||| ||||||||||||    
T  27781283 catcttcaaaattatttcttggaagcacgttcgaatcaaaattcttcaca 27781234  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 38227211 - 38227279
Alignment:
Q  217 tcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgccttgatta 285  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||| ||||    
T  38227211 tcacttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcaccttcatta 38227279  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 27781077 - 27781006
Alignment:
Q  214 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgccttgatta 285  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||  ||||| |||| ||||    
T  27781077 tcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaattttgtttcaccttcatta 27781006  T

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Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 27777560 - 27777494
Alignment:
Q  214 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 280  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||||    
T  27777560 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 27777494  T

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Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 27782401 - 27782467
Alignment:
Q  214 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 280  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||||    
T  27782401 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 27782467  T

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Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 17700150 - 17700232
Alignment:
Q  16 attagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataat 98  Q
    ||||||||||||||||||    |||||||| |||||||||| ||||| |||||||||||| ||| |||||| || ||||||||    
T  17700150 attagaagattaagacaaccacaaaaggtggaaattgataatctaaaatttatatatatcgtgtcagcaaactgttcaataat 17700232  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 27781439 - 27781404
Alignment:
Q  74 tcttgtaagcaaattgctcaataattcatgatgata 109  Q
    ||||||||||||||||||||||||||||||||||||    
T  27781439 tcttgtaagcaaattgctcaataattcatgatgata 27781404  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 21898928 - 21899020
Alignment:
Q  16 attagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgata 109  Q
    |||||||||||||||||||   |||||||| |||||||| ||| ||| |||||||| ||| ||| |||||| || |||||||| ||| ||||||    
T  21898928 attagaagattaagacaaacacaaaaggtggaaattgat-aaccaaaatttatataaatcgtgtcagcaaactgttcaataatccataatgata 21899020  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 21899130 - 21899221
Alignment:
Q  189 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 280  Q
    |||||| ||||||||||||||||| || ||||||| || ||| || ||||| |||||| |   |||| ||||||||||||| ||||| ||||    
T  21899130 acactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattcatagaaactcttgaccctaattcggtttcacctt 21899221  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 17663830 - 17663772
Alignment:
Q  16 attagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatat 74  Q
    |||||||||||||||||||   |||||||| ||||||| || ||||| |||||||||||    
T  17663830 attagaagattaagacaaacacaaaaggtggaaattgaaaatctaaaatttatatatat 17663772  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 27781116 - 27781080
Alignment:
Q  214 tcatcacttggaagctcgtttaaatctaaattcttca 250  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  27781116 tcatcacttggaagctcgttcaaatcaaaattcttca 27781080  T

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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 35250109 - 35250240
Alignment:
Q  144 cataatatcattcaaaatcacaaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaa 243  Q
    ||||||||||||||||||||  |||||||||||||| ||||||| |||||| |||| |||||||||||| |||||||||| ||||||||| ||||| |||    
T  35250109 cataatatcattcaaaatcattaaaaagatataaaccaagacgagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaa 35250208  T
Q  244 ttcttcacaacttttgaccctaattcagtttc 275  Q
    |||||||||||||||||||| | |||||||||    
T  35250209 ttcttcacaacttttgacccgatttcagtttc 35250240  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 35249944 - 35250037
Alignment:
Q  16 attagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatgata 109  Q
    ||||||||| |||||||||||||||||||   ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  35249944 attagaagactaagacaaatgtaaaaggtaataattgataatctaaactctatatatatgttgtaagcaaattgctcaataattcatgatgata 35250037  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 51220010 - 51220096
Alignment:
Q  189 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttc 275  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  |||| |||||| | |||||| |||||||||||||||||||    
T  51220010 acactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttc 51220096  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 51220797 - 51220883
Alignment:
Q  189 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttc 275  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| || || |||||| | |||| | |||||||||||||||||||    
T  51220797 acactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttc 51220883  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 440904 - 440987
Alignment:
Q  189 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagt 272  Q
    |||||| || |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  440904 acactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggccctaattcagt 440987  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 440807 - 440839
Alignment:
Q  195 gttggtttcatcttcaaactcatcacttggaag 227  Q
    |||||||||||||||||| ||||||||||||||    
T  440807 gttggtttcatcttcaaaatcatcacttggaag 440839  T

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