View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_15 (Length: 304)
Name: NF19976_low_15
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_15 |
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| [»] scaffold0214 (1 HSPs) |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 155 - 289
Target Start/End: Complemental strand, 31570968 - 31570834
Alignment:
| Q |
155 |
atctacgatctagctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgatcgac |
254 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31570968 |
atctacgagctggctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgaccgac |
31570869 |
T |
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| Q |
255 |
acagtggcaacgacaggacagtcaaactcacggtg |
289 |
Q |
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| T |
31570868 |
acagtggcaacgacaggacagccaaactcacggtg |
31570834 |
T |
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Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 155 - 289
Target Start/End: Complemental strand, 6507627 - 6507493
Alignment:
| Q |
155 |
atctacgatctagctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgatcgac |
254 |
Q |
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|||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6507627 |
atctacgagctggctcaaaattaaagatccaacctattgattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgaccgac |
6507528 |
T |
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| Q |
255 |
acagtggcaacgacaggacagtcaaactcacggtg |
289 |
Q |
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| T |
6507527 |
acagtggcaatgacaggacaaccaaactcatggtg |
6507493 |
T |
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Target: scaffold0214 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 167 - 289
Target Start/End: Original strand, 621 - 743
Alignment:
| Q |
167 |
gctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgatcgacacagtggcaacg |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
621 |
gctcaaaattaaagatccaacctatagattggaactaaaaactaaatgcattacagtaagaaatgatacataatgtaaggtgaccgacacagtggaaacg |
720 |
T |
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| Q |
267 |
acaggacagtcaaactcacggtg |
289 |
Q |
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| T |
721 |
acaggacagccaaactcacggtg |
743 |
T |
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Target: scaffold0566 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 10475 - 10582
Alignment:
| Q |
167 |
gctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgatcgacacagtggcaacg |
266 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||| |
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| T |
10475 |
gctcaaaattaaagatccaacctatagattagaactaaagactaaatacatttcactaagaaatgatacataatgtaaggtgactgatatagtggcaacg |
10574 |
T |
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| Q |
267 |
acaggaca |
274 |
Q |
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|| ||||| |
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| T |
10575 |
acgggaca |
10582 |
T |
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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 15721704 - 15721793
Alignment:
| Q |
167 |
gctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgatcgacac |
256 |
Q |
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||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
15721704 |
gctcaaaattaaagatctatcctatagattggaactaaagattaaatacatttcactaagaaaggatacataatgtaaggtgaccgacac |
15721793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 1967943 - 1967861
Alignment:
| Q |
167 |
gctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtga |
249 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||| |||||||||||||| |
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| T |
1967943 |
gctcaaaattaaagatgtaacctatagattggaactaaagattaaatatatttcactaagaaaggatatataatgtaaggtga |
1967861 |
T |
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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 50378904 - 50378815
Alignment:
| Q |
167 |
gctcaaaattaaagatccaacctatagattggaactaaagactaaatgcatttcactaagaaatgatacataatgtaaggtgatcgacac |
256 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||| |||||| |||||| ||||| |||||| |
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| T |
50378904 |
gctcaaaattaaagatctaacctatagattggaaataaaggttaaatacatttcactaagaaaggatacaaaatgtagggtgaccgacac |
50378815 |
T |
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