View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_2 (Length: 501)
Name: NF19976_low_2
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Complemental strand, 1213933 - 1213460
Alignment:
| Q |
8 |
gagatgaacaagtgttgctttcatttagcgcacaaccaatactccaaaactattagggattcaaaatccaaaagcaacaataaacttcaaatttgtcatc |
107 |
Q |
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| T |
1213933 |
gagatgaacaagtgttgctttcatttagcgcacaaccaatactccaaaactattagggattcaaaatccaaaagcaccaataaacttcaaatttgtaatc |
1213834 |
T |
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| Q |
108 |
caggtctctttctctatttctcctctgccttccatttgcatgtatccttgtcaatcactatatatgtacataatgaccagccaattagtcactccatata |
207 |
Q |
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| T |
1213833 |
caggactctctct----ttctcctttgccttccatttgcatgtatccttgtcaatcactatatatgtacataatgaccagccaattagtcactccatata |
1213738 |
T |
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| Q |
208 |
tcctgtcaaaccacgtgcaaaacataaatgcttgcaattctctctacaaatcattttctgaacgtgtttcacgcaaaattcgtcttgttttttatgcaaa |
307 |
Q |
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| T |
1213737 |
tcctgtcaaaccacgtgcaaaacataaatgcttgcaattctctctacaaatcaatttctgaacgtgtttcacgcaaaattcgtcttgttttttatgcaaa |
1213638 |
T |
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| Q |
308 |
tctctctgcaacacatttgttattttctgccgacaatgtgtaactatttaatgacagggaatcctcctcgtaatgttacttgtttatttatcgaataacc |
407 |
Q |
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| T |
1213637 |
tctctctgcaacacatttgttattttctgccgacaatgtgtaactatttaatgacagggaatcctcctcgtaatgttacttgtttatttatcgaataacc |
1213538 |
T |
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| Q |
408 |
aaatggaatgaaatgaacaattctaggtatggtttcaaatcaaaataagagtgaatgatatgaaggataccaagcaat |
485 |
Q |
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| T |
1213537 |
aaatggaatgaaatgaacaattctaggtatggtttcaaatcaaaataagagtgaatgatatgaaggataccaagcaat |
1213460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 1234642 - 1234536
Alignment:
| Q |
186 |
agccaattagtcactccatatatcctgtcaaaccacgtgcaaaacataaatgcttgcaattctctctacaaatcattttctgaacgtgtttcacgcaaaa |
285 |
Q |
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| T |
1234642 |
agccaattggtcactccatatattctgttaaaccacgtgaaaaccataattgcttgcaattctctctgtaaatcattttctcaacgtgtttcgcgcaaaa |
1234543 |
T |
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| Q |
286 |
ttcgtct |
292 |
Q |
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|| |||| |
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| T |
1234542 |
tttgtct |
1234536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 1234499 - 1234431
Alignment:
| Q |
295 |
ttttttatgcaaatctctctgcaacacatttgttattttctgccgacaatgtgtaactatttaatgaca |
363 |
Q |
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| T |
1234499 |
ttttttatacaattctctctacaacacatttgttattttcttcctactatgtgtaactatttaatgaca |
1234431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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