View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_3 (Length: 489)
Name: NF19976_low_3
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 106 - 413
Target Start/End: Original strand, 13743621 - 13743934
Alignment:
| Q |
106 |
attcacaatatatacatatttgggtgagatttcatttgttttctgttataccatcaattacccaagtatacataggaagaagaagcatgctagcaaggat |
205 |
Q |
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| T |
13743621 |
attcacaatatatacacatttgggtgagatttaatatgttttctgttataccatcaattacccaagtatacataggaagaagaggcatgctagcaaggat |
13743720 |
T |
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| Q |
206 |
gggagtgggaacaataatgagcaagagtaggattactgttaatttgatataacaacatgtttgcgtgattaggaatagggattattgtaataatagaatg |
305 |
Q |
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| T |
13743721 |
gagagtgggaac---aatgagaaagaataggattactg-----------taacatcatgtttgagtgattaggaatagggattattgtaataatagaatg |
13743806 |
T |
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| Q |
306 |
tgtgaatgg---------------gt-----ggtgagttggtttaaaatataagggaaagctagggaagtctaaggggaaggaggtattaagggttcttt |
385 |
Q |
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| T |
13743807 |
tgtgagtggagagacgataacggagtctatgggtgagttggtttaaaatataagggaaaactagggaagtctatggggaagggggtattaagggttcttt |
13743906 |
T |
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| Q |
386 |
tgctgcccttggaagtgttgcttattaa |
413 |
Q |
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| T |
13743907 |
tgctgcccttggaagtgttgcttattaa |
13743934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 13743965 - 13744025
Alignment:
| Q |
413 |
attatgtttgtcattttcttgtcgcgagtcactggatttcttcctcctttgttcacccaac |
473 |
Q |
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| T |
13743965 |
attatgtttgtaattttcttgtattgagccactggatttcttcttcctttgttcacccaac |
13744025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 167 - 314
Target Start/End: Complemental strand, 52269608 - 52269461
Alignment:
| Q |
167 |
ccaagtatacataggaagaagaagcatgctagcaaggatgggagtgggaacaataatgagcaagagtaggattactgttaatttgatataacaacatgtt |
266 |
Q |
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| T |
52269608 |
ccaagtatacataggaagaagaagcatgctagcaaggatgggagtgggaacaataatgagcaagagtaggattactgttaatttgatataacaacatgtt |
52269509 |
T |
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| Q |
267 |
tgcgtgattaggaatagggattattgtaataatagaatgtgtgaatgg |
314 |
Q |
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| T |
52269508 |
tgcgtgattaggaatagggattattgtaataatagaatgtgtgaatgg |
52269461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 317 - 417
Target Start/End: Complemental strand, 52269430 - 52269330
Alignment:
| Q |
317 |
ggtgagttggtttaaaatataagggaaagctagggaagtctaaggggaaggaggtattaagggttcttttgctgcccttggaagtgttgcttattaatta |
416 |
Q |
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| T |
52269430 |
ggtgagttggtttaaaatataagggaaagctagggaagtctaaggggaaggaggtattaagggttcttttgctgcccttggaagtgttgcttattaatta |
52269331 |
T |
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| Q |
417 |
t |
417 |
Q |
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| T |
52269330 |
t |
52269330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 52269297 - 52269237
Alignment:
| Q |
413 |
attatgtttgtcattttcttgtcgcgagtcactggatttcttcctcctttgttcacccaac |
473 |
Q |
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| T |
52269297 |
attatgtttgtcattttcttgtcgcgagtcactggatttcttcctcctttgttcacccaac |
52269237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 52279577 - 52279516
Alignment:
| Q |
16 |
ataatgtattgatagaatttaagaaatatataaagcttagggacaattgaaatcacatcata |
77 |
Q |
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| T |
52279577 |
ataatttattgatagaatttgagaaatatataaagcttagggacaattgacatcacatcata |
52279516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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