View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_4 (Length: 449)
Name: NF19976_low_4
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 25258830 - 25258432
Alignment:
| Q |
10 |
gcagagatgagcgaagcagagccggggatgttgttgtacgaatttaggcacgcgagggcatcggtagaggagttaagaagcgaattggagaggaatgtgt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25258830 |
gcagagatgagcgaagcagagccggggatgttgttgtacgaatttaggcacgcgagggcatcggtagaggagctaagaggcgaattggagaggaatgtgt |
25258731 |
T |
|
| Q |
110 |
cgtcgcaggttgttcaatgggaaatggaagatggtttgagggagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25258730 |
cgtcgcaggttgttcaatgggaaatggaagatggtttgagagagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatat |
25258631 |
T |
|
| Q |
210 |
tgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattaccgatg-tttaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
25258630 |
tgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattgccgatgttttaaa |
25258531 |
T |
|
| Q |
309 |
ttgtggtcgctattgtgcgaaaaaacacaatgcaattgatgtaactcatagnnnnnnnaaatgaaaaatcgaaagcaacaaaggctgaatctcaatgga |
407 |
Q |
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|||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
25258530 |
ttgtggtcacgattgtgcggaaaaacacaatgcaattgatgtaactcatagtttttttaaatgaaaaatcgaaagcaacaaaggctgaatctcagtgga |
25258432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 25322620 - 25322222
Alignment:
| Q |
10 |
gcagagatgagcgaagcagagccggggatgttgttgtacgaatttaggcacgcgagggcatcggtagaggagttaagaagcgaattggagaggaatgtgt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25322620 |
gcagagatgagcgaagcagagccggggatgttgttgtacgaatttaggcacgcgagggcatcggtagaggagctaagaggcgaattggagaggaatgtgt |
25322521 |
T |
|
| Q |
110 |
cgtcgcaggttgttcaatgggaaatggaagatggtttgagggagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25322520 |
cgtcgcaggttgttcaatgggaaatggaagatggtttgagagagagagtggagtgtgttagaatgtgctttggtgtgcttaaatctggtgctgataatat |
25322421 |
T |
|
| Q |
210 |
tgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattaccgatg-tttaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
25322420 |
tgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattgccgatgttttaaa |
25322321 |
T |
|
| Q |
309 |
ttgtggtcgctattgtgcgaaaaaacacaatgcaattgatgtaactcatagnnnnnnnaaatgaaaaatcgaaagcaacaaaggctgaatctcaatgga |
407 |
Q |
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|||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
25322320 |
ttgtggtcacgattgtgcggaaaaacacaatgcaattgatgtaactcatagtttttttaaatgaaaaatcgaaagcaacaaaggctgaatctcagtgga |
25322222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 33136911 - 33136803
Alignment:
| Q |
178 |
tttggtgtgcttaaatctggtgctgataatattgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgta |
277 |
Q |
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|||||||| |||| ||||||||||||||||||| || |||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||| |
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| T |
33136911 |
tttggtgttcttagatctggtgctgataatattattgctcaacttgatgatttctttgatgagattgttgaaggaaggaagaagcttttggacttttgta |
33136812 |
T |
|
| Q |
278 |
gtcataggt |
286 |
Q |
| |
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||||||||| |
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| T |
33136811 |
gtcataggt |
33136803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 16706302 - 16706194
Alignment:
| Q |
200 |
ctgataatattgtttctcagcttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttggatttttgtagtcataggtaatttaattaccg |
299 |
Q |
| |
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||||||||||||||| | |||||||||||||||| ||||||| ||| ||| |||| |||||||||||||||| ||| ||||||||||||||||||| |
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| T |
16706302 |
ctgataatattgtttatgagcttgatgatttctttgatgaaactgtggaaactagggttaagcttttggatttttttaggcataggtaatttaattacca |
16706203 |
T |
|
| Q |
300 |
atgtttaaa |
308 |
Q |
| |
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| ||||||| |
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| T |
16706202 |
aagtttaaa |
16706194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 16706683 - 16706622
Alignment:
| Q |
95 |
tggagaggaatgtgtcgtcgcaggttgttcaatgggaaatggaagatggtttgagggagaga |
156 |
Q |
| |
|
|||||| |||||||| || | |||| ||||||||||||||||||| |||||||||||||||| |
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| T |
16706683 |
tggagatgaatgtgttgttgaaggtcgttcaatgggaaatggaagttggtttgagggagaga |
16706622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 36866100 - 36866052
Alignment:
| Q |
221 |
ttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttgga |
269 |
Q |
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||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
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|
| T |
36866100 |
ttgatgatttctttgatgaaattgttgaaggaaggaagaagcttttgga |
36866052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 641466 - 641420
Alignment:
| Q |
220 |
cttgatgatttcttcgatgaaattgtagaaggtaggaagaagctttt |
266 |
Q |
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|||||||||||||| |||||||| || ||||| |||||||||||||| |
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| T |
641466 |
cttgatgatttctttgatgaaatagttgaaggaaggaagaagctttt |
641420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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