View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19976_low_5 (Length: 424)

Name: NF19976_low_5
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19976_low_5
NF19976_low_5
[»] chr3 (3 HSPs)
chr3 (18-153)||(6509016-6509149)
chr3 (158-266)||(6508856-6508964)
chr3 (358-424)||(6507782-6507848)
[»] chr8 (2 HSPs)
chr8 (158-264)||(44969242-44969348)
chr8 (114-153)||(44969389-44969428)
[»] chr6 (3 HSPs)
chr6 (158-266)||(31573521-31573629)
chr6 (18-78)||(31574276-31574336)
chr6 (358-424)||(31571126-31571193)
[»] chr5 (2 HSPs)
chr5 (158-264)||(35331011-35331117)
chr5 (114-153)||(35331158-35331197)
[»] chr7 (2 HSPs)
chr7 (172-266)||(1969140-1969234)
chr7 (358-424)||(1968074-1968140)
[»] chr4 (2 HSPs)
chr4 (173-266)||(50380123-50380216)
chr4 (358-424)||(50379071-50379137)
[»] scaffold0566 (2 HSPs)
scaffold0566 (158-241)||(9439-9522)
scaffold0566 (358-422)||(10242-10306)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 6509149 - 6509016
Alignment:
Q  18 agacaattaacgtatttttcaattaatctgaaagagattttggcctactacaacattaaaagaaaaaatcaatgtaaaggaagaacnnnnnnngcaacaa 117  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||       |||||||    
T  6509149 agacaattaacgtatttttcaattaatctggaagagatttttgcctactacaacattaaa--aaaaaatcaatgtaaaggaagaacaaaaaaagcaacaa 6509052  T
Q  118 cctaactcggtgtgtggtgatatctattttgtcaaa 153  Q
    ||||||||||||||||||||||||||||||||||||    
T  6509051 cctaactcggtgtgtggtgatatctattttgtcaaa 6509016  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 6508964 - 6508856
Alignment:
Q  158 tttgcaacagacttttgtgttttggcctttgtagtttttaagggtactaaaactgaattatatttcttttgttcatattaatttcatactaatttttact 257  Q
    ||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6508964 tttgcaacagacttttgtgttctagcttttgtagtttttaaaggtactaaaactgaattatatttcttttgttcatattaatttcatactaatttttact 6508865  T
Q  258 cgatccaca 266  Q
    |||||||||    
T  6508864 cgatccaca 6508856  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 6507848 - 6507782
Alignment:
Q  358 tccttttgattttctattacaggtttttactctttcatcgaaaagaaatcatctcataccaatatcc 424  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6507848 tccttttgattttctattacaggtttttactctttcatcaaaaagaaatcatctcataccaatatcc 6507782  T

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Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 44969348 - 44969242
Alignment:
Q  158 tttgcaacagacttttgtgttttggcctttgtagtttttaagggtactaaaactgaattatatttcttttgttcatattaatttcatactaatttttact 257  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  44969348 tttgcaacagacttttgtgttttggcttttgtagtttttaagggtactaaaactgaattatatttcttttgattatattaattttatactaatttttact 44969249  T
Q  258 cgatcca 264  Q
    |||||||    
T  44969248 cgatcca 44969242  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 153
Target Start/End: Complemental strand, 44969428 - 44969389
Alignment:
Q  114 acaacctaactcggtgtgtggtgatatctattttgtcaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44969428 acaacctaactcggtgtgtggtgatatctattttgtcaaa 44969389  T

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Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 31573629 - 31573521
Alignment:
Q  158 tttgcaacagacttttgtgttttggcctttgtagtttttaagggtactaaaactgaattatatttcttttgttcatattaatttcatactaatttttact 257  Q
    ||||||| ||||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31573629 tttgcaatagacttttgtgttctgccttttgtagtttttaagggtactaaaactaaattatatttcttttgttcatattaatttcatactaatttttact 31573530  T
Q  258 cgatccaca 266  Q
    |||||||||    
T  31573529 cgatccaca 31573521  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 31574336 - 31574276
Alignment:
Q  18 agacaattaacgtatttttcaattaatctgaaagagattttggcctactacaacattaaaa 78  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  31574336 agacaattaacgtatttttcaattaatctggaagagatttttgcctactacaacattaaaa 31574276  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 31571193 - 31571126
Alignment:
Q  358 tccttttgattttctattacaggttttt-actctttcatcgaaaagaaatcatctcataccaatatcc 424  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  31571193 tccttttaattttctattacaggttttttactctttcatcaaaaagaaatcatctcataccaatatcc 31571126  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 35331117 - 35331011
Alignment:
Q  158 tttgcaacagacttttgtgttttggcctttgtagtttttaagggtactaaaactgaattatatttcttttgttcatattaatttcatactaatttttact 257  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  35331117 tttgcaacagacttttgtgttttggcttttgtagtttttaagggtattaaaactgaattatatttcttttgattatattaattttatactaatttttact 35331018  T
Q  258 cgatcca 264  Q
    |||||||    
T  35331017 cgatcca 35331011  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 153
Target Start/End: Complemental strand, 35331197 - 35331158
Alignment:
Q  114 acaacctaactcggtgtgtggtgatatctattttgtcaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35331197 acaacctaactcggtgtgtggtgatatctattttgtcaaa 35331158  T

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Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 1969234 - 1969140
Alignment:
Q  172 ttgtgttttggcctttgtagtttttaagggtactaaaactgaattatatttcttttgttcatattaatttcatactaatttttactcgatccaca 266  Q
    |||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969234 ttgtgttttgacttttgtagtttttgagggtacaaaaactgaattatatttcttttgttcatattaatttcatactaatttttactcgatccaca 1969140  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 1968140 - 1968074
Alignment:
Q  358 tccttttgattttctattacaggtttttactctttcatcgaaaagaaatcatctcataccaatatcc 424  Q
    ||||||||||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||    
T  1968140 tccttttgattttctattataagtttttactcattcatcaaaaagaaatcatctcataccaatatcc 1968074  T

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Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 50380216 - 50380123
Alignment:
Q  173 tgtgttttggcctttgtagtttttaagggtactaaaactgaattatatttcttttgttcatattaatttcatactaatttttactcgatccaca 266  Q
    ||||||||| | |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50380216 tgtgttttgacttttgtagtttttgagggtaaaaaaactgaattatatttcttttgttcatattaatttcatactaatttttactcgatccaca 50380123  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 50379137 - 50379071
Alignment:
Q  358 tccttttgattttctattacaggtttttactctttcatcgaaaagaaatcatctcataccaatatcc 424  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  50379137 tccttttgattgtctattacaagtttttactcattcatcaaaaagaaatcatctcataccaatatcc 50379071  T

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Target: scaffold0566 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 9439 - 9522
Alignment:
Q  158 tttgcaacagacttttgtgttttggcctttgtagtttttaagggtactaaaactgaattatatttcttttgttcatattaattt 241  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  9439 tttgcaacaaacttttgtgttttggcttttgtagtttttaagggtactaaaactgaattatattttttttgttcatactaattt 9522  T

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Target: scaffold0566; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 10242 - 10306
Alignment:
Q  358 tccttttgattttctattacaggtttttactctttcatcgaaaagaaatcatctcataccaatat 422  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10242 tccttttgattttctattacaggtttttactctttcatcaaaaagaaatcatctcataccaatat 10306  T

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