View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_6 (Length: 421)
Name: NF19976_low_6
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 48365856 - 48366246
Alignment:
| Q |
20 |
tttacgacaccagcagaaaaaattggagcattgaaggaaaaaataacgaggtaagctactgaaaagttttatcacaaatttggaacaactcttgttgctt |
119 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365856 |
tttacgacaccagcagagaaaattggagcattgaaagaaaaaataacgaggtaagctactgaaaagttttatcacaaatttggaacaactcttgttgctt |
48365955 |
T |
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| Q |
120 |
tgatcttaagatttctatgtatttctttgttgtaatgttttgtttnnnnnnnnnnnnnn--taggtacgcggagaggaatccacaatactggcatcctaa |
217 |
Q |
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| T |
48365956 |
taatcttaagatttctatgtatttctttgttgtaatgttttgtttaaaaataaataaaaaataggtacgcggagaggaatccacaatactggcatcctaa |
48366055 |
T |
|
| Q |
218 |
tttcagcttggtagtaatagagattgaaaatgtaaataagattaagatgggtctttatgttactcacacaatgaactttcaagagtttggagagaaggtg |
317 |
Q |
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| T |
48366056 |
tttcagcttggtagtaatagagattgaaaatgtaaataagattaagatgggtctttatgttactcacacaatgaactttcaagagtttggagagaaggtg |
48366155 |
T |
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| Q |
318 |
aataggaaaagtgaactagtgatggaagttaaaagaatatttgaagagctcaatatcagatacagccttcttccacaaggtgttcatctca |
408 |
Q |
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| T |
48366156 |
aataggaaaagtgaactagtgatggaagttaaaagaatatttgaagagctcaatatcagatacagccttcttccacaaggtgttcatctca |
48366246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 188 - 408
Target Start/End: Complemental strand, 48396525 - 48396305
Alignment:
| Q |
188 |
ggagaggaatccacaatactggcatcctaatttcagcttggtagtaatagagattgaaaatgtaaataagattaagatgggtctttatgttactcacaca |
287 |
Q |
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| T |
48396525 |
ggagaggaatccacaatactggcatcctagtttcagtttggcagtgaaggagattgaaaatgtaaataagattaagatgggtctttatgttactcacaca |
48396426 |
T |
|
| Q |
288 |
atgaactttcaagagtttggagagaaggtgaataggaaaagtgaactagtgatggaagttaaaagaatatttgaagagctcaatatcagatacagccttc |
387 |
Q |
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|||||||||||||| ||||| |||||| || ||| ||||||| ||||||||||||| || | |||||||||||||||||||||||||||| |||| |
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| T |
48396425 |
atgaactttcaagaatttggggagaagactaagcggagaagtgaattagtgatggaagtaaagaaaatatttgaagagctcaatatcagatactacctta |
48396326 |
T |
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| Q |
388 |
ttccacaaggtgttcatctca |
408 |
Q |
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|||| |||||||||||||||| |
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| T |
48396325 |
ttccgcaaggtgttcatctca |
48396305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 188 - 408
Target Start/End: Original strand, 48385556 - 48385776
Alignment:
| Q |
188 |
ggagaggaatccacaatactggcatcctaatttcagcttggtagtaatagagattgaaaatgtaaataagattaagatgggtctttatgttactcacaca |
287 |
Q |
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||||| ||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
48385556 |
ggagaagaatccacaatactggcatcctaattttggattggtagtgaaggagattgaaaatgtaaataatattaagatgggtctttttgttactcacaca |
48385655 |
T |
|
| Q |
288 |
atgaactttcaagagtttggagagaaggtgaataggaaaagtgaactagtgatggaagttaaaagaatatttgaagagctcaatatcagatacagccttc |
387 |
Q |
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||||| ||||||||||||||||||||| || ||| |||||||||||| |||||||| || | |||||||||||| |||||||| ||||||| ||||| |
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| T |
48385656 |
atgaattttcaagagtttggagagaagaccaagcggagaagtgaactagtaatggaagtaaagaaaatatttgaagatctcaatataagatacaaccttc |
48385755 |
T |
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| Q |
388 |
ttccacaaggtgttcatctca |
408 |
Q |
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||||||||||||||||||||| |
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| T |
48385756 |
ttccacaaggtgttcatctca |
48385776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 48385399 - 48385534
Alignment:
| Q |
20 |
tttacgacaccagcagaaaaaattggagcattgaaggaaaaaataacgaggtaagctactgaaaagttttatcacaaatttggaacaactcttgttgctt |
119 |
Q |
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||||||||||||||||| |||||||| ||| |||| |||||| | | ||||||||||| || ||||||||| |||||||||||| |||| |||| |
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| T |
48385399 |
tttacgacaccagcagagaaaattggggcactgaaagaaaaagtgaagaggtaagctagtg--gagttttatcctcaatttggaacaagtcttattgccg |
48385496 |
T |
|
| Q |
120 |
tgatcttaagatttctatgtatttctttgttgtaatgt |
157 |
Q |
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| T |
48385497 |
taatcttagtatttcaatgaatttctttgttctaatgt |
48385534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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