View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19976_low_8 (Length: 407)
Name: NF19976_low_8
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19976_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 5440321 - 5440132
Alignment:
| Q |
18 |
gtgcagttggtggttatacgaatggatttgaatgtttcacaaatactgagatgcttaatttagactatgggaagtggatcaatgtacattcaaacttaga |
117 |
Q |
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| T |
5440321 |
gtgcagttggtggttatacgaatggatttgaatgcttcacaaatactgagatgcttaatttagactatgggaagtggatcaatgtacattcaaacttaga |
5440222 |
T |
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| Q |
118 |
caaggtaaattaaattagcttatggttttatatgatccaaatttgaaaagctttagtggaaatatcaaatgacatatatgatatatgcat |
207 |
Q |
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| T |
5440221 |
caaggtaaattaaattagcttatggttttatatgatccaaatttgaaaagctttagtggaaatatcaaatgacatatatgatatatgcat |
5440132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 260 - 394
Target Start/End: Complemental strand, 5440126 - 5439992
Alignment:
| Q |
260 |
ggaaatggtataagtaaatgtgcttttctaccttgaccctagatttctaaacattgcaaagggaaataagagagcatgttaaaaagtgcatgttgctagc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5440126 |
ggaaatggtataagtaaatgtgcttttctaccttgaccctagatttctaaacattgcaaagggaaataagagagcatgttgaaaagtgcatgttgctagc |
5440027 |
T |
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| Q |
360 |
attattcgactcaataaaatgtccatttattttat |
394 |
Q |
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| T |
5440026 |
attattcaactcaataaaatgtccatttattttat |
5439992 |
T |
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