View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19976_low_9 (Length: 376)

Name: NF19976_low_9
Description: NF19976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19976_low_9
NF19976_low_9
[»] chr1 (5 HSPs)
chr1 (1-362)||(38227283-38227644)
chr1 (290-361)||(27782690-27782761)
chr1 (290-361)||(27777200-27777271)
chr1 (290-362)||(27780613-27780685)
chr1 (295-355)||(21900007-21900067)
[»] chr4 (1 HSPs)
chr4 (290-362)||(35250597-35250669)
[»] chr7 (2 HSPs)
chr7 (291-358)||(441432-441499)
chr7 (68-121)||(441176-441229)
[»] chr8 (1 HSPs)
chr8 (69-140)||(44989105-44989176)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 38227283 - 38227644
Alignment:
Q  1 gtcttcttctcttcaatatcatgaccgccactagttagtagcacaccttgttcctttttcctcctcctcttcttcttctcattatcatccatcatattgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |   |||||||||||||||||||||||||||||||    
T  38227283 gtcttcttctcttcaatatcatgaccgccactagttagtagcacaccttgttcctttttcttccgc---ttcttcttctcattatcatccatcatattgc 38227379  T
Q  101 aagagagatttttccttttagcaccacggtgattcacatcctcataacccatgcgagatagttgcaatagaatttctgcaactgtttcaataacatcatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38227380 aagagagatttttccttttagcaccacggtgattcacatcctcataacccatgcgagatagttgcaatagaatttctgcaactgtttcaataacatcatc 38227479  T
Q  201 atcgccgtcgtcaatattcatatatcttcttctcctgca---ctgttgtttctcgaaagacggtgctgcaactgttggaccgttttgacgatagtgacat 297  Q
    |||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  38227480 atcgtcgtcgtcaatattcatatatcttcttctcctgcatggctgttgtttctcgaaagagggtgctgcaactgttggaccgttttgacgacagtgacat 38227579  T
Q  298 ctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgttt 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38227580 ctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgttt 38227644  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 27782690 - 27782761
Alignment:
Q  290 agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtt 361  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782690 agtgacatatcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtt 27782761  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 27777271 - 27777200
Alignment:
Q  290 agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtt 361  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27777271 agtgacatatcatatgtccattcaatgctttgttagaagttaaaaccttgttgcaaacatcacatgagtgtt 27777200  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 27780685 - 27780613
Alignment:
Q  290 agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgttt 362  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  27780685 agtgacatatcatatgtccattcaaagctttgttagaagtaaaaaccttgttgcaaacatcacacgagtgttt 27780613  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 21900007 - 21900067
Alignment:
Q  295 catctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatg 355  Q
    ||||||||||| || ||||| || ||||| || | |||||||||||| |||||||||||||    
T  21900007 catctcatatgcccgttcaaagcattgttggacgaaaaaaccttgttacaaacatcacatg 21900067  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 35250597 - 35250669
Alignment:
Q  290 agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgttt 362  Q
    ||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35250597 agtgacacctcttatgttcatccaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgttt 35250669  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 441432 - 441499
Alignment:
Q  291 gtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagt 358  Q
    ||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  441432 gtgacatatcttatgtctatgcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagt 441499  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 441176 - 441229
Alignment:
Q  68 tcttcttcttctcattatcatccatcatattgcaagagagatttttccttttag 121  Q
    ||||||||||||||| ||||||||||||||||||||| || |||| ||||||||    
T  441176 tcttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttag 441229  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 44989176 - 44989105
Alignment:
Q  69 cttcttcttctcattatcatccatcatattgcaagagagatttttccttttagcaccacggtgattcacatc 140  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||| |||||||  | ||||||||||||||||    
T  44989176 cttcatcttctcattatcatccatcatattgcaagaaagtgtttgccttttactatcacggtgattcacatc 44989105  T

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