View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19978_high_1 (Length: 428)
Name: NF19978_high_1
Description: NF19978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19978_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 469870 - 469471
Alignment:
| Q |
14 |
agaccaatatcgttttttg-atttgagtgcttggtggtataacccttttgtccacattggttattccacatcttgatttcgtttgtttgttcttcttcgt |
112 |
Q |
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| T |
469870 |
agaccaatatggttttttttatttgagtgcttggtggtataacccttttgtccacattggttattccacatcttgatttcgtttgtttgttcttcttcgt |
469771 |
T |
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| Q |
113 |
ttttattaatttgtaattggactagactttgtgttaatgtcattctaggcacaccttgtatttgaatgattttcatcttttttatatatctcttttggct |
212 |
Q |
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| T |
469770 |
ttttattaatttgtaattggactagactttgtgttaa-gtcattccaggcacaccttgtatttgaatgattttcatcttttttatatatctcttttggct |
469672 |
T |
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| Q |
213 |
tattgnnnnnnnnnnnnnnnnnnnnnnnntcaattctttgcacgcttataaatactttttattgagattagaagaatttatgaaatgcgtaaatttcact |
312 |
Q |
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| T |
469671 |
tattgaaaaaaactttaaaaaaaaaaaaatcaattctttgcacgcttataaatactttttattgagattagaagaatttatgaaatgcgtaaatttcact |
469572 |
T |
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| Q |
313 |
ctactcattctaagaatgcaatctcttggattaactaattaccagtcatgaaatagacataacagatccatctttttcaccaaaaatcagaattttgaat |
412 |
Q |
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| T |
469571 |
ctactcattctaagaatgcaatctcttggattaactaattaccagtcatgaaatagacataacagatccatctttttcaccaaaaatcagaattttgaat |
469472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 12312551 - 12312592
Alignment:
| Q |
153 |
cattctaggcacaccttgtatttgaatgattttcatcttttt |
194 |
Q |
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| T |
12312551 |
cattctaggcacactttgtgcttgaatgattttcatcttttt |
12312592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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