View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19978_high_3 (Length: 270)

Name: NF19978_high_3
Description: NF19978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19978_high_3
NF19978_high_3
[»] chr4 (6 HSPs)
chr4 (14-268)||(42715581-42715836)
chr4 (13-237)||(42761215-42761439)
chr4 (13-237)||(42742394-42742618)
chr4 (13-237)||(42751753-42751977)
chr4 (13-237)||(42736081-42736305)
chr4 (16-237)||(42768145-42768366)
[»] chr5 (2 HSPs)
chr5 (13-237)||(23041790-23042014)
chr5 (27-128)||(37016363-37016464)
[»] chr7 (1 HSPs)
chr7 (27-128)||(31144731-31144832)
[»] chr2 (1 HSPs)
chr2 (88-127)||(29560925-29560964)
[»] chr3 (1 HSPs)
chr3 (18-62)||(37106533-37106577)
[»] chr1 (1 HSPs)
chr1 (22-70)||(46215244-46215292)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 42715581 - 42715836
Alignment:
Q  14 tactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacat 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42715581 tactttacctgttgtcatgattgctgacttgacagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacat 42715680  T
Q  114 gacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42715681 gacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcga 42715780  T
Q  214 ctcctggtgcggtgatgtcaggctagaacaatagaaaac-aaaatcaaaattgcaa 268  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||    
T  42715781 ctcctggtgcggtgatgtcaggctagaacaacggaaaacaaaaatcataattgcaa 42715836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 42761215 - 42761439
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || ||||||||||||||    
T  42761215 atactttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggaca 42761314  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    |||||| ||||| ||||||||| || | ||| ||||||| || |||||||||   | ||| |  |||||||||  |||||||||||| |||||||||| |    
T  42761315 tgacatcgaagtgcctgacatagtaataaaaggagttcttcgcttatcatatgaattttctgtaggagatatagcttcactataagctgcaattatgttg 42761414  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    ||||||||||| |||||||||||||    
T  42761415 actcctggtgcagtgatgtcaggct 42761439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 42742394 - 42742618
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || ||||||||||||||    
T  42742394 atactttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggaca 42742493  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    || ||| ||||| |||||||||||||| ||| ||||||| || |||||| ||||   |   || |||| ||||  ||| |||||||| |||||||| | |    
T  42742494 tgccatcgaagtgcctgacataatattaaaatgagttcttcgcttatcagattcacttggtgaaggaggtatagcttcgctataagctgcaattattttg 42742593  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    | ||||||||| |||||||||||||    
T  42742594 attcctggtgcagtgatgtcaggct 42742618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 42751753 - 42751977
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || ||||||||||||||    
T  42751753 atactttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggaca 42751852  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    || ||| ||||| |||||||||||||| ||| ||||||| || |||||| ||||   |   || |||| ||||  ||| |||||||| |||||||| | |    
T  42751853 tgccatcgaagtgcctgacataatattaaaatgagttcttcgcttatcagattcacttggtgaaggaggtatagcttcgctataagctgcaattattttg 42751952  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    | ||||||||| |||||||||||||    
T  42751953 attcctggtgcagtgatgtcaggct 42751977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 42736305 - 42736081
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||| ||||||| ||||||||||||||||||||||| || |||||||||| |||||||| |||||| |  || |||||||| ||||||||||| |||||    
T  42736305 atactctacctgtggtcatgattgctgacttgatagctgctggactccaatcaggatgaatagatttaagcagaccaacaagtccagcaacatgtggaca 42736206  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    |||||||||||| ||||||||| |  | ||| || || |||| |||||  || |   ||  || |||||| ||  |||||||||||| |||||||||| |    
T  42736205 tgacattgaagtgcctgacatagtcataaaaggaattatgcgcttatcggatgcactttgtgaaggagatgtagattcactataagctgcaattatgttg 42736106  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    ||||||||||| || ||||||||||    
T  42736105 actcctggtgctgtaatgtcaggct 42736081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 42768145 - 42768366
Alignment:
Q  16 ctttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatga 115  Q
    |||||||||| |||||||| || ||||| |||||||| |||||||||| ||||||||||||||| | ||  |||||||  |||| |||||||||   |||    
T  42768145 ctttacctgtggtcatgatcgcggacttaatagcagctggactccaatcaggatgaagagatttgattataccaacaatgccagaaacatgaggggttga 42768244  T
Q  116 cattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgact 215  Q
    |||||||||||| |||| | || ||||| ||| ||||||||||||| ||| |||||  ||||||||   |  ||||||||||||||| | ||||||||||    
T  42768245 cattgaagttcccgacaaagtaatgaaaggagatctgcgtttatcagatttttgttgagagggagaagcagcttcactataagcagcgactatgtcgact 42768344  T
Q  216 cctggtgcggtgatgtcaggct 237  Q
    || ||| | |||||||| ||||    
T  42768345 cccggtcctgtgatgtcgggct 42768366  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 23042014 - 23041790
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| | |||||| |  ||| ||||||| |||||||||||||||||    
T  23042014 atactttacctgtagtcatgattgctgacttgataacagctggactccaatcaggatggacagatttgagcagcgcaacaagtccagcaacatgaggaca 23041915  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    || ||| ||||| |||||||||||||| ||| ||||||| || |||||| ||||   |   ||  ||| || |  |||||||||||| |||||||| | |    
T  23041914 tgccatcgaagtgcctgacataatattaaaaggagttcttcgcttatcagattcacttggtgaacgaggtaaagcttcactataagctgcaattattttg 23041815  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    ||||||||||| |||||||||||||    
T  23041814 actcctggtgcagtgatgtcaggct 23041790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 37016363 - 37016464
Alignment:
Q  27 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 126  Q
    |||||||| || || ||||| ||||| ||||||||| |||||||||| |  || |  || || ||||  ||||||||||||||||| |||||||||||||    
T  37016363 gtcatgatggcagatttgatggcagctggactccaactaggatgaagtgtcttgagaagaccgacaatgccagcaacatgaggacaagacattgaagttc 37016462  T
Q  127 ct 128  Q
    ||    
T  37016463 ct 37016464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 31144731 - 31144832
Alignment:
Q  27 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 126  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||| | ||| |  || ||| ||   ||| ||||||||||||| ||||| |||||||    
T  31144731 gtcatgatagctgatttaatagctgcaggactccaattaggatgaagtgttttgataagtccagcagtgccaacaacatgaggacaagacatagaagttc 31144830  T
Q  127 ct 128  Q
    ||    
T  31144831 ct 31144832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 29560964 - 29560925
Alignment:
Q  88 caacaagaccagcaacatgaggacatgacattgaagttcc 127  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  29560964 caacaataccagcaacatgaggacatgacatagaagttcc 29560925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 37106533 - 37106577
Alignment:
Q  18 ttacctgttgtcatgattgctgacttgatagcagcaggactccaa 62  Q
    ||||||||||||||||| ||||| || |||||||||||| |||||    
T  37106533 ttacctgttgtcatgatagctgatttaatagcagcaggagtccaa 37106577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 46215292 - 46215244
Alignment:
Q  22 ctgttgtcatgattgctgacttgatagcagcaggactccaattaggatg 70  Q
    ||||||||||||||||||| || |||||||| |||||||| | ||||||    
T  46215292 ctgttgtcatgattgctgattttatagcagctggactccattcaggatg 46215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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