View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19978_low_2 (Length: 294)
Name: NF19978_low_2
Description: NF19978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19978_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 8931061 - 8930812
Alignment:
| Q |
27 |
tactaattgtatgtttggtaaggtttaatttactaaaattagataatggtgaaataggtagtggagataaaagtgaagatggattgcgaagggtgcgaaa |
126 |
Q |
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| T |
8931061 |
tactaattgtatgtttggtaaggtttaatttactaaaattagataatggtgaaataggtagtggagataaaagtgaagatggattgcgaagggtgtgaaa |
8930962 |
T |
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| Q |
127 |
gaagggtgaagaaatcagtggaaggcatgaagggagtgacaaaagtggaagtggaaccaaaacaaagcaagctcactgtaaccggctacgtagagccaaa |
226 |
Q |
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| T |
8930961 |
gaagggtgaagaaatcagtggaaggcatgaagggagtgacaaaagtggaagtggaaccaaaacaaagcaagctcactgtaaccggctacgtagagccaaa |
8930862 |
T |
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| Q |
227 |
caaagtgttggagcgggtgaagcaccatacaggaaagaaagccgagtttt |
276 |
Q |
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| T |
8930861 |
caaagtgttggagcgggtgaagcaccatacaggaaagaaagccgagtttt |
8930812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 27630924 - 27631008
Alignment:
| Q |
94 |
taaaagtgaagatggattgcgaagggtgcgaaagaagggtgaagaaatcagtggaaggcatgaagggagtgacaaaagtggaagt |
178 |
Q |
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| T |
27630924 |
taaaagtgaagatggattgcgaaggatgcgaaagaaaagtgaagaaatcagtggaagggatgaaaggagtgacacaagtggaagt |
27631008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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