View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19978_low_3 (Length: 270)

Name: NF19978_low_3
Description: NF19978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19978_low_3
NF19978_low_3
[»] chr4 (6 HSPs)
chr4 (14-268)||(42715581-42715836)
chr4 (13-237)||(42761215-42761439)
chr4 (13-237)||(42742394-42742618)
chr4 (13-237)||(42751753-42751977)
chr4 (13-237)||(42736081-42736305)
chr4 (16-237)||(42768145-42768366)
[»] chr5 (2 HSPs)
chr5 (13-237)||(23041790-23042014)
chr5 (27-128)||(37016363-37016464)
[»] chr7 (1 HSPs)
chr7 (27-128)||(31144731-31144832)
[»] chr2 (1 HSPs)
chr2 (88-127)||(29560925-29560964)
[»] chr3 (1 HSPs)
chr3 (18-62)||(37106533-37106577)
[»] chr1 (1 HSPs)
chr1 (22-70)||(46215244-46215292)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 42715581 - 42715836
Alignment:
Q  14 tactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacat 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42715581 tactttacctgttgtcatgattgctgacttgacagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacat 42715680  T
Q  114 gacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42715681 gacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcga 42715780  T
Q  214 ctcctggtgcggtgatgtcaggctagaacaatagaaaac-aaaatcaaaattgcaa 268  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||    
T  42715781 ctcctggtgcggtgatgtcaggctagaacaacggaaaacaaaaatcataattgcaa 42715836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 42761215 - 42761439
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || ||||||||||||||    
T  42761215 atactttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggaca 42761314  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    |||||| ||||| ||||||||| || | ||| ||||||| || |||||||||   | ||| |  |||||||||  |||||||||||| |||||||||| |    
T  42761315 tgacatcgaagtgcctgacatagtaataaaaggagttcttcgcttatcatatgaattttctgtaggagatatagcttcactataagctgcaattatgttg 42761414  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    ||||||||||| |||||||||||||    
T  42761415 actcctggtgcagtgatgtcaggct 42761439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 42742394 - 42742618
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || ||||||||||||||    
T  42742394 atactttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggaca 42742493  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    || ||| ||||| |||||||||||||| ||| ||||||| || |||||| ||||   |   || |||| ||||  ||| |||||||| |||||||| | |    
T  42742494 tgccatcgaagtgcctgacataatattaaaatgagttcttcgcttatcagattcacttggtgaaggaggtatagcttcgctataagctgcaattattttg 42742593  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    | ||||||||| |||||||||||||    
T  42742594 attcctggtgcagtgatgtcaggct 42742618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 42751753 - 42751977
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| | |||||| |  ||||||||||| || ||||||||||||||    
T  42751753 atactttacctgtagtcatgattgctgacttgatagcagctggactccaatcaggatggatagatttaagcagcccaacaagtccggcaacatgaggaca 42751852  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    || ||| ||||| |||||||||||||| ||| ||||||| || |||||| ||||   |   || |||| ||||  ||| |||||||| |||||||| | |    
T  42751853 tgccatcgaagtgcctgacataatattaaaatgagttcttcgcttatcagattcacttggtgaaggaggtatagcttcgctataagctgcaattattttg 42751952  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    | ||||||||| |||||||||||||    
T  42751953 attcctggtgcagtgatgtcaggct 42751977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 42736305 - 42736081
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||| ||||||| ||||||||||||||||||||||| || |||||||||| |||||||| |||||| |  || |||||||| ||||||||||| |||||    
T  42736305 atactctacctgtggtcatgattgctgacttgatagctgctggactccaatcaggatgaatagatttaagcagaccaacaagtccagcaacatgtggaca 42736206  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    |||||||||||| ||||||||| |  | ||| || || |||| |||||  || |   ||  || |||||| ||  |||||||||||| |||||||||| |    
T  42736205 tgacattgaagtgcctgacatagtcataaaaggaattatgcgcttatcggatgcactttgtgaaggagatgtagattcactataagctgcaattatgttg 42736106  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    ||||||||||| || ||||||||||    
T  42736105 actcctggtgctgtaatgtcaggct 42736081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 42768145 - 42768366
Alignment:
Q  16 ctttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatga 115  Q
    |||||||||| |||||||| || ||||| |||||||| |||||||||| ||||||||||||||| | ||  |||||||  |||| |||||||||   |||    
T  42768145 ctttacctgtggtcatgatcgcggacttaatagcagctggactccaatcaggatgaagagatttgattataccaacaatgccagaaacatgaggggttga 42768244  T
Q  116 cattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcgact 215  Q
    |||||||||||| |||| | || ||||| ||| ||||||||||||| ||| |||||  ||||||||   |  ||||||||||||||| | ||||||||||    
T  42768245 cattgaagttcccgacaaagtaatgaaaggagatctgcgtttatcagatttttgttgagagggagaagcagcttcactataagcagcgactatgtcgact 42768344  T
Q  216 cctggtgcggtgatgtcaggct 237  Q
    || ||| | |||||||| ||||    
T  42768345 cccggtcctgtgatgtcgggct 42768366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 23042014 - 23041790
Alignment:
Q  13 atactttacctgttgtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggaca 112  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| | |||||| |  ||| ||||||| |||||||||||||||||    
T  23042014 atactttacctgtagtcatgattgctgacttgataacagctggactccaatcaggatggacagatttgagcagcgcaacaagtccagcaacatgaggaca 23041915  T
Q  113 tgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattcttgttccgagggagatatattttcactataagcagcaattatgtcg 212  Q
    || ||| ||||| |||||||||||||| ||| ||||||| || |||||| ||||   |   ||  ||| || |  |||||||||||| |||||||| | |    
T  23041914 tgccatcgaagtgcctgacataatattaaaaggagttcttcgcttatcagattcacttggtgaacgaggtaaagcttcactataagctgcaattattttg 23041815  T
Q  213 actcctggtgcggtgatgtcaggct 237  Q
    ||||||||||| |||||||||||||    
T  23041814 actcctggtgcagtgatgtcaggct 23041790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 37016363 - 37016464
Alignment:
Q  27 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 126  Q
    |||||||| || || ||||| ||||| ||||||||| |||||||||| |  || |  || || ||||  ||||||||||||||||| |||||||||||||    
T  37016363 gtcatgatggcagatttgatggcagctggactccaactaggatgaagtgtcttgagaagaccgacaatgccagcaacatgaggacaagacattgaagttc 37016462  T
Q  127 ct 128  Q
    ||    
T  37016463 ct 37016464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 31144731 - 31144832
Alignment:
Q  27 gtcatgattgctgacttgatagcagcaggactccaattaggatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttc 126  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||| | ||| |  || ||| ||   ||| ||||||||||||| ||||| |||||||    
T  31144731 gtcatgatagctgatttaatagctgcaggactccaattaggatgaagtgttttgataagtccagcagtgccaacaacatgaggacaagacatagaagttc 31144830  T
Q  127 ct 128  Q
    ||    
T  31144831 ct 31144832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 29560964 - 29560925
Alignment:
Q  88 caacaagaccagcaacatgaggacatgacattgaagttcc 127  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  29560964 caacaataccagcaacatgaggacatgacatagaagttcc 29560925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 37106533 - 37106577
Alignment:
Q  18 ttacctgttgtcatgattgctgacttgatagcagcaggactccaa 62  Q
    ||||||||||||||||| ||||| || |||||||||||| |||||    
T  37106533 ttacctgttgtcatgatagctgatttaatagcagcaggagtccaa 37106577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 46215292 - 46215244
Alignment:
Q  22 ctgttgtcatgattgctgacttgatagcagcaggactccaattaggatg 70  Q
    ||||||||||||||||||| || |||||||| |||||||| | ||||||    
T  46215292 ctgttgtcatgattgctgattttatagcagctggactccattcaggatg 46215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University