View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19978_low_6 (Length: 209)
Name: NF19978_low_6
Description: NF19978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19978_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 37150721 - 37150543
Alignment:
| Q |
15 |
caaaggatggtacgtagctgcatactgtcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgccgatgaatcaatc |
114 |
Q |
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| T |
37150721 |
caaagaatggtacgtagctgcatactctcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgcccatgaatcaatc |
37150622 |
T |
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| Q |
115 |
cctgatgaccatctagtcgtcgaaactctccttctctctgttgatccatatcttcgcggaacaatcaccggcacccttg |
193 |
Q |
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| T |
37150621 |
cctgatgaccatctaatcgtcgaaactctccttctctctgttgatccatatcttcgcggaacaatcaccggcacccttg |
37150543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 37155850 - 37155673
Alignment:
| Q |
12 |
aagcaaaggatggtacgtagctgcatactgtcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgccgatgaatca |
111 |
Q |
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| T |
37155850 |
aagcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattca |
37155751 |
T |
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| Q |
112 |
atccctgatgaccatctagtcgtcgaaactctccttctctctgttgatccatatcttcgcggaacaatcaccggcacc |
189 |
Q |
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| T |
37155750 |
atccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcgcagaacaatcaccggcacc |
37155673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 37161419 - 37161281
Alignment:
| Q |
44 |
ctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgccgatgaatcaatccctgatgaccatctagtcgtcgaaactct |
143 |
Q |
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| T |
37161419 |
ctgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccctgataatcatctagcagttgaaactct |
37161320 |
T |
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| Q |
144 |
ccttctctctgttgatccatatcttcgcggaacaatcac |
182 |
Q |
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| T |
37161319 |
ccttctttccgttgacccttatcttcgtggaagaatcac |
37161281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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