View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19979_low_1 (Length: 847)
Name: NF19979_low_1
Description: NF19979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19979_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 773; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 13 - 832
Target Start/End: Original strand, 3731770 - 3732600
Alignment:
| Q |
13 |
tcttagtgttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731770 |
tcttagtgttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctca |
3731869 |
T |
|
| Q |
113 |
atatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaattcctgattatgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731870 |
atatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaattcctgattatgta |
3731969 |
T |
|
| Q |
213 |
ccaaaaaatgaatgacatcaaatacaaattaaaactcaactatggtcaatactcaatagcatcattattgaactaaaccttagcatgcagacaataggta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731970 |
ccaaaaaatgaatgacatcaaatacaaattaaaactcaactatagtcaatactcaatagcatcattattgaactaaaccttagcatgcagacaataggta |
3732069 |
T |
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| Q |
313 |
aagaagaactttataattttatcagtaagt-----------tttatcaaccaaaccaaacaaaaatttcatatttaaaatttttacgtgcatcgaaatcc |
401 |
Q |
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||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3732070 |
aagaataactttataattttatcaataagtttttaaaaagttttatcaaccaaaccaaacaaaaatttcatatttaaaatttttacgtgcatcgaaatcc |
3732169 |
T |
|
| Q |
402 |
ttctgagtcaattcaccttatgaatcatgtcgactcgaaattcctttcgccatttcagataattgagaaacatatctttggatatcgtcatatcaaaatc |
501 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3732170 |
ttctgagccaattcaccttatgaatcatgtcgactcgaaattcctttcgccatttcagataattgagaaacatatctttggatatcgtcatatcaaaatc |
3732269 |
T |
|
| Q |
502 |
attcatccgcagaaaccttgacgtcaaaggcaatacagttagaaaaccaagtccataaacatgatttagaacagaaagagaaatagacatctataatctt |
601 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3732270 |
attcatccgcagaaaccttgacgtcaaaggcaatacagttagaaaaccaagtccataaacatgatttagaacagaaagagaaatagacatctataatctt |
3732369 |
T |
|
| Q |
602 |
aatctatttacctaagaagagtatgataatcattgtgtttaggtggtaatagaccctcacgtgaaagcatttcgcgaaaagcctcaacaatttgctcatc |
701 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3732370 |
aatctatttaccttagaagagtatgataatcattgtgtttaggtggtaatagaccctcacgtgaaagcatttcgcgaaaagcctcaacaatttgctcatc |
3732469 |
T |
|
| Q |
702 |
atttggatcatgagttccttctagaaccatttccaaacttttactccttccaaatttcatgagtgggtaagacaacaatgacttgatggagagtgaagcc |
801 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3732470 |
atttggatcatgagttccttctagaaccatttccaaacttttactccttccaaatttcatgagtgggtaagacaacaatgacttgatggagagtgaagcc |
3732569 |
T |
|
| Q |
802 |
tttttctttcctttttgtgtagtagggagat |
832 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
3732570 |
tttttctttcctttttgtgtagtagggagat |
3732600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 11684088 - 11684327
Alignment:
| Q |
13 |
tcttagtgttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctca |
112 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11684088 |
tcttagggttttctcttgttctgacacatgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaacatctatcatcccaattctctcg |
11684187 |
T |
|
| Q |
113 |
atatacacaggtctgccacatttatcaactccatggtatccatggggataacattttttcacttctgtgtattctgtgaatttgaattcctgattatgta |
212 |
Q |
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|||||||||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11684188 |
atatacacagacctgccacatttatcaaccccatggaatccatgaggatagcattttttcacttctgtgtattctggaaatttgaattcctgattatgta |
11684287 |
T |
|
| Q |
213 |
ccaaaaaatgaatgacat--caaatacaaattaaaactca |
250 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| |
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| T |
11684288 |
ccaaaaaatgaatgacattgaaaaaacaaattaaaactca |
11684327 |
T |
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Back To:
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