View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19979_low_2 (Length: 548)
Name: NF19979_low_2
Description: NF19979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19979_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Original strand, 48700788 - 48701310
Alignment:
| Q |
13 |
atcctaattctaattaatgaattatagttggtgtgtgtttgacgagtgagacttactatgagcatagaccatagttgagaaggaaaaccataagcttgtg |
112 |
Q |
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| T |
48700788 |
atcctaattctaattaatgaattatagttggtgtgtgtttgatgagtgagacttactatgagcatagaccatagttgagaaggaaaaccataagcttgtg |
48700887 |
T |
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| Q |
113 |
ccaatctgatgagagagtggtcccctgaaatcattgtttattctatgttcaaggacccaaacaacaaatccaatgaacacaaatgaacaagctgatgtca |
212 |
Q |
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| T |
48700888 |
ccaatctgatgagagagtggtcccctgaaatcattgtttattctatgttcaaggacccaaacaacaaatccaatgaacacaaatgaacaagctgatgtca |
48700987 |
T |
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| Q |
213 |
cccaaagatcccatgtgagtggcttcaaaaaggcccatgcatttttctttctgctgtctttcattgaaacaaccattgtcacaccagattctgtgtatgg |
312 |
Q |
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| T |
48700988 |
cccaaagatcccatgtgagtggcttcaaaaaggcccatgcatttttctttctgctgtctttcattgaaacaaccattgtcacaccagattctgtgtatgg |
48701087 |
T |
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| Q |
313 |
cattgtgaaatcaacatagtttgacctatctgcagtgattgttatatcccccactaccgcatcaaatttctgtcaatccaaaataacttttttcattctt |
412 |
Q |
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| T |
48701088 |
cattgtgaaatcaacacagtttgacctatctgcagtgattgttatatcccccactaccgcatcaaatttctgtcaatccaaaataactattttcattctt |
48701187 |
T |
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| Q |
413 |
ttcattttggcacatgcacatgctcataatgaaagaatcattaac--atataacaggagaagatattatatgagaagaagaggttaccccgcggtaaagt |
510 |
Q |
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| T |
48701188 |
ttcattttggcacatgcacatgctcataatgaaagaatcattaacatatataacaggagaagatattatatgagaagaagaggttaccccgtcgtgaagt |
48701287 |
T |
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| Q |
511 |
tgaatgatcaactcattgtaggt |
533 |
Q |
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| T |
48701288 |
tgattgatcaactcattgtaggt |
48701310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 27 - 418
Target Start/End: Original strand, 48712443 - 48712832
Alignment:
| Q |
27 |
taatgaattatagttggtgtgtgtttgacgagtgagacttactatgagcatagaccatagttgagaaggaaaaccataagcttgtgccaatctgatgaga |
126 |
Q |
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| T |
48712443 |
taatgaattatactttgtgtgtgtttaatgagtgagacttactttgagcaaagaccatagttgaaaaggaaaaccataagctagtaccaatctgatgaga |
48712542 |
T |
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| Q |
127 |
gagtggtcccctgaaatcattgtttattctatgttcaaggacccaaacaacaaatccaatgaacacaaatgaacaagctgatgtcacccaaagatcccat |
226 |
Q |
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| T |
48712543 |
ggtaggtcccctgaaatctttgtttattctatgttcaaggacccatacaacaaatccaatgaacacaaatgaacaagctgttgttacccaaagatcccac |
48712642 |
T |
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| Q |
227 |
gtgagtggcttcaaaaaggcccatgcatttttctttctgctgtctttcattgaaacaaccattgtcacaccagattctgtgtatggcattgtgaaatcaa |
326 |
Q |
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| T |
48712643 |
gtgagtggtttcagaaaggcccatgcatttttctttctgttgtctttcattagaacaaccattgtcacaccagattctgtgtatggcatggtgaaatcaa |
48712742 |
T |
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| Q |
327 |
catagtttgacctatctgcagtgattgttatatcccccactaccgcatcaaatttctgtcaatccaaaataacttttttcattcttttcatt |
418 |
Q |
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| T |
48712743 |
catagtcggacctgttcgcgatgattgttacatcccccaccaccgcatcaaagttctgtcaatccaaaat--cattttttattcttttcatt |
48712832 |
T |
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