View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19979_low_3 (Length: 512)
Name: NF19979_low_3
Description: NF19979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19979_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 6 - 498
Target Start/End: Original strand, 37498475 - 37498967
Alignment:
| Q |
6 |
aggagcacagaagctcaaaagccgcaatgaaactttcagaatttttaaggtgtcctataaaagttcaaagatgtgctggtagaattgaacagaaagaatt |
105 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498475 |
aggaacacagaagctcaaaagccgcgatgaaactttcagaatttttaaggtgtcctataaaagttcaaagatgtgctggtagaattgaacagaaagaatt |
37498574 |
T |
|
| Q |
106 |
gatagttcaagttgatcacatggatgtagttccaggtgatattgtgatttttgaacctggcgacctctttcctggagatatcaggctgttatcttcaaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498575 |
gatagttcaagttgatcacatggatgtagttccaggtgatattgtgatttttgaacctggcgacctctttcctggagatatcaggctgttatcttcaaaa |
37498674 |
T |
|
| Q |
206 |
caccttgttgtaaggtacttgaataagaaaatttactcgaataggaaaacagcttgccttgtcagctaactaaatgtcattttgtgatttcattaacttc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498675 |
caccttgttgtaaggtacttgaataagaaaatttactcgaataggaaaacagcttgccttgtcagctaactaaatgtcattttgtgatttcattaacttc |
37498774 |
T |
|
| Q |
306 |
ttaacagccaggcctcactaactggggaatcttggacaaccgacaaagctggcgatgttagagaagatcacagcactcctttactagatttaaagaacat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37498775 |
ttaacagccaggcctcactaactggggaatcttggacaaccgacaaagctggcgatgttagagaagatcacaacactcctttactagatttaaagaacat |
37498874 |
T |
|
| Q |
406 |
ttgctttatggtgagtaacacaactccttgtccttattttgtttcaatggtagttacagattacagcatctgtcgtgacaaaggttgattttg |
498 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498875 |
ttgctttatggtgagtaacacaactccttgtccctattttgtttcaatggtagttacagattacagcatctgtcgtgacaaaggttgattttg |
37498967 |
T |
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