View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1997_high_1_N (Length: 731)
Name: NF1997_high_1_N
Description: NF1997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1997_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 29 - 718
Target Start/End: Complemental strand, 3014470 - 3013781
Alignment:
| Q |
29 |
accttgtagcacttgtgggcacaatgctgaatgtttgtcctccgattgtttcgtttttataatacaagtcagtatttagtccgtgtgtcttgaactgaga |
128 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014470 |
accttatagcacttgtgggcacaatgctgaatgtttgtcctccgattgtttcgtttttataatacaagtcagtatttagtccgtgtgtcttgaactgaga |
3014371 |
T |
|
| Q |
129 |
aacaaccttagagagcctggtatgaaactcatcttgaacatccttagactgctgcaacaatgctttacgaaatggagcattaggacatgttttccagtca |
228 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3014370 |
aacaaacttagagagcctggtatgaaactcatcttgaacatccttagactgctgcaacaatgctttacgaaaaggagcattaggacatgttttccagtca |
3014271 |
T |
|
| Q |
229 |
tgaatcatgtcgatcttattcaaggcaaggatgaattgtttgttggtgatttttaatagatcaagtaagtctatagtatgtggctgtaagccatcatcat |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
3014270 |
tgaatcatgtcgatcttattcaaggcaaggatgaattgtttgttggtgagttttaatagatcgagtaagtctatagtatgtgggtgtaagccatcatcat |
3014171 |
T |
|
| Q |
329 |
gcataatgtcaacaaccaaaatagcaatatcacatagatataagcccctgaatagtgtgttatcaagaaccagcatacgtctttcagcatcaacagcagg |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3014170 |
gcataatgtcaacaaccaaaatagcaatatcacatagatataagcccctgaatggtgtgttatcaagaaccagcatacgtctttcagcatcaccagcagg |
3014071 |
T |
|
| Q |
429 |
aaaatgtgctgaaaaatggggagaactgttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaacaggt |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014070 |
aaaatgtgctgaaaaatggggagaactgttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaacaggt |
3013971 |
T |
|
| Q |
529 |
ttccgattactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagcatcaagcaaaatt |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3013970 |
ttccgattactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagcatcaagcaaaatt |
3013871 |
T |
|
| Q |
629 |
caaacatgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
718 |
Q |
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| T |
3013870 |
cgaacatgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
3013781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 182337 - 182276
Alignment:
| Q |
457 |
ttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgca |
518 |
Q |
| |
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|||||||||||||||| ||| |||||| ||||||| ||||||| |||||||||||||||| |
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| T |
182337 |
ttgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatgatgca |
182276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 29220009 - 29220057
Alignment:
| Q |
177 |
ctgctgcaacaatgctttacgaaatggagcattaggacatgttttccag |
225 |
Q |
| |
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|||||||| || |||||||| || ||||||||||||||||||||||||| |
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| T |
29220009 |
ctgctgcatcactgctttacaaattggagcattaggacatgttttccag |
29220057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 37 - 566
Target Start/End: Original strand, 40672231 - 40672775
Alignment:
| Q |
37 |
gcacttgtgggcacaatgctgaatgtttgtcctccg---attgtttcgtttttataatacaagtcagtatttagtccgtgtgtcttgaactgagaaacaa |
133 |
Q |
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||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
40672231 |
gcacttgtgggcacaatgctgaatgtttgtcctcctccaatagttatgtttttataatacaaatcagtatttagcccgtgtgtcttgaactgagaaacaa |
40672330 |
T |
|
| Q |
134 |
ccttagagagcctggtatgaaactcatcttgaacatccttagactgctgcaacaatgctttacgaaatggagcattaggacatgttttccagtcatgaat |
233 |
Q |
| |
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||||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
40672331 |
ccttagagaccctggtatgaaagtcatcttgaacacccttagactgctgcatcaatgctttacgaaatggagcattgggacatgttttccagtgatgaat |
40672430 |
T |
|
| Q |
234 |
catgtcgatcttattcaaggcaaggatgaattgtttgttggtgatttttaatagatcaagtaagtctatagtatgtggctgtaagccatc------atca |
327 |
Q |
| |
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|||||||| | |||||||||||| ||||||||||||||||| |||||||||||| ||| |||| ||| ||||||||||| |||| |
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| T |
40672431 |
catgtcgaccatattcaaggcaacaatgaattgtttgttggtagtttttaatagattgagtgagtc---------tgggtgtaagccatcatcatgatca |
40672521 |
T |
|
| Q |
328 |
tgcataatgtcaacaaccaaaatagcaatatcacatagatataagcccctgaatagtgtgttatcaagaaccagcatacgtctttcagcatcaacagcag |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| | | ||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
40672522 |
tgcataatgtcaacaaccaaaatagcaatatcacatagatatgaacccctaattggtgcgttatcaacaaccagcatacgtctttcagcatcaccagcag |
40672621 |
T |
|
| Q |
428 |
gaaaatg---------tgctgaaaaatggggagaactgttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgca |
518 |
Q |
| |
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||||||| || || || ||||||| | ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
40672622 |
gaaaatgtgttgttgatgatggaatatggggaagattgtctttacctcgaatacaaccgagaagcatggttttgccagtgtatgcatcacctatgatgca |
40672721 |
T |
|
| Q |
519 |
agaaacaggtttccgattact------cggtggcttaacagtatcacctggaaa |
566 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
40672722 |
ggaaacaggtttccgataactaggcggcggcggcttaacagtatcacctggaaa |
40672775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 655 - 718
Target Start/End: Original strand, 40672796 - 40672856
Alignment:
| Q |
655 |
caaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
718 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40672796 |
caaaattcaagcataa---taataatcaatcgattttagttatcattaccttcattcatcttct |
40672856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 44627071 - 44627000
Alignment:
| Q |
154 |
aactcatcttgaacatccttagactgctgcaacaatgctttacgaaatggagcattaggacatgttttccag |
225 |
Q |
| |
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||||||| |||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||| |
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| T |
44627071 |
aactcattttgaacatccttagactgctgcgtcattgctttacgaattggagcattgcgacatgttttccag |
44627000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 44605098 - 44605015
Alignment:
| Q |
277 |
atttttaatagatcaagtaagtctatagtatgtggctgtaagccatcatcatgcataatgtcaacaaccaaaatagcaatatcacataga |
366 |
Q |
| |
|
||||||||||||| ||| | |||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
44605098 |
atttttaatagattgagtgactctatagtttgtggctctaagccat------gcataatgtcaacaaccaaaattgcaatatcacataga |
44605015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 44626897 - 44626780
Alignment:
| Q |
243 |
cttattcaaggcaaggatgaattgtttgttggtgatttttaatagatcaagtaagtctatagtatgtggctgtaagccatcatcatgcataatgtcaaca |
342 |
Q |
| |
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||||||||| |||| |||||||| |||| | ||||||||||||| ||| | |||||||| ||||||| |||||||| |||||||||| ||| |
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| T |
44626897 |
cttattcaatgcaacgatgaattcagtgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccat------gcataatgtccaca |
44626804 |
T |
|
| Q |
343 |
accaaaatagcaatatcacataga |
366 |
Q |
| |
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|||||||| ||||||||||||||| |
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|
| T |
44626803 |
accaaaattgcaatatcacataga |
44626780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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