View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1997_low_2 (Length: 631)
Name: NF1997_low_2
Description: NF1997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1997_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 317 - 624
Target Start/End: Original strand, 35383068 - 35383383
Alignment:
| Q |
317 |
gattaatgtgcttgaaaaggtttccgcatccacatcctccttgtacattttgggtccattagctatcaagtttataatgaacattt-cttagtggaaggt |
415 |
Q |
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| T |
35383068 |
gattaatgtgcttgaaaaggtttccgcatccacatcctccttgtacattttgggtccattagctatcaagtttataatgaatattttcttagtggaaaat |
35383167 |
T |
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| Q |
416 |
-------tttcaaaagcttatgaaaaataaaatctttgcaaagaggtcctatcttattgctttttcagtttacaacataattgtctcatgttggaatgta |
508 |
Q |
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| T |
35383168 |
aaaatctttgcaaaagcttatgaaaaataaaatctttgcaaagaggtcctatcttattgctttttcagtttacaacataattgtctcatgttggaatgta |
35383267 |
T |
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| Q |
509 |
aaatacatgtgaattttcacatcccttgattccttgttgtagctacacaagggatcatatagaagatgttggttgtgattgaatcattgcttgtaatgtg |
608 |
Q |
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| T |
35383268 |
aaatacatgtgaattttcacatcccttgattccttgttgtagctacacaagggatcatatagaagatgttggttgtgattgaatcattgcttgtaatgtg |
35383367 |
T |
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| Q |
609 |
tttgatgcctatgata |
624 |
Q |
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| T |
35383368 |
tttgatgcctttgata |
35383383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 35382782 - 35382997
Alignment:
| Q |
29 |
aaatgtcatgccaagcttttgttcagttgtcatctctttctctcatgtccaacattgacccatcctttccaacgtacacttttgtatatttatgagcaac |
128 |
Q |
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| T |
35382782 |
aaatgtcatgccaagcttttgttcagttgtcatctctttctctcatgtccaacattgacccatcctttccaacgtacacttttgtatat----gagcaac |
35382877 |
T |
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| Q |
129 |
ttagtctattaatctttcactattttggtatataaatattaaatagagaaaattactactataggaagcttcaatcttggtaattgtctactgtagaaat |
228 |
Q |
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| T |
35382878 |
ttagtctattaatctttcactattttggtatataaatattaaatagagaaaattactactataggaagcttcaatcttggtaattgtttactgttgaaat |
35382977 |
T |
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| Q |
229 |
acaattttcgttttgaagag |
248 |
Q |
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| T |
35382978 |
acaattttcgttttgaagag |
35382997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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