View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1997_low_5 (Length: 312)
Name: NF1997_low_5
Description: NF1997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1997_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 91 - 305
Target Start/End: Original strand, 52511955 - 52512168
Alignment:
| Q |
91 |
ctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnnngaaatgagcaaagtagaagaatga |
190 |
Q |
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| T |
52511955 |
ctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaagaaaaaaa-gaaatgagcaaattagaagaatga |
52512053 |
T |
|
| Q |
191 |
atgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcac |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512054 |
atgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcac |
52512153 |
T |
|
| Q |
291 |
ctaaatgaaaagaaa |
305 |
Q |
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|||||||||| |||| |
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| T |
52512154 |
ctaaatgaaatgaaa |
52512168 |
T |
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