View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1997_low_8 (Length: 253)

Name: NF1997_low_8
Description: NF1997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1997_low_8
NF1997_low_8
[»] chr4 (6 HSPs)
chr4 (57-253)||(55246503-55246713)
chr4 (108-169)||(9041871-9041932)
chr4 (111-169)||(55245971-55246029)
chr4 (100-169)||(53687701-53687770)
chr4 (110-169)||(53896780-53896839)
chr4 (66-95)||(53688500-53688529)
[»] chr1 (2 HSPs)
chr1 (67-169)||(31868333-31868437)
chr1 (112-168)||(37560773-37560829)
[»] chr7 (4 HSPs)
chr7 (107-169)||(4997165-4997227)
chr7 (111-165)||(4996420-4996474)
chr7 (112-169)||(48850480-48850537)
chr7 (100-160)||(33223206-33223266)
[»] chr3 (3 HSPs)
chr3 (105-169)||(38052580-38052644)
chr3 (110-160)||(22239254-22239304)
chr3 (96-169)||(45243101-45243174)
[»] chr6 (5 HSPs)
chr6 (110-165)||(1634938-1634993)
chr6 (107-169)||(19802532-19802594)
chr6 (110-159)||(4222794-4222843)
chr6 (110-166)||(19803247-19803303)
chr6 (111-165)||(4221601-4221655)
[»] chr8 (2 HSPs)
chr8 (108-164)||(21510783-21510839)
chr8 (112-169)||(44007569-44007626)
[»] chr2 (1 HSPs)
chr2 (110-169)||(22436425-22436484)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 57 - 253
Target Start/End: Original strand, 55246503 - 55246713
Alignment:
Q  57 tgtatatttgaacggtagttaactaccgtcggataaatctaattaccgttggagg-taaaaacgtcatttccatgtataaatatgacgttttgaatgtca 155  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| || | |||||||||||||||||||||||    
T  55246503 tgtatacttgaacggtagttaactaccgtcggataaatctaattaccgttgggggataaaaatgtcatttctatatgtaaatatgacgttttgaatgtca 55246602  T
Q  156 gaaaagcaattttcccgtgagaaaccaaccatctagtggatgatgatcccaa--------ag----tat-cgttacttatgtaaaaatacaaaaatctac 242  Q
    |||||  ||||||||| |||||||||||||||||||||||||||||||||||        ||    ||| |||||||| |||||||||||||||||||||    
T  55246603 gaaaattaattttcccatgagaaaccaaccatctagtggatgatgatcccaactttaattagaagatatccgttacttctgtaaaaatacaaaaatctac 55246702  T
Q  243 ttattttattt 253  Q
    |||||||||||    
T  55246703 ttattttattt 55246713  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 9041932 - 9041871
Alignment:
Q  108 gaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  9041932 gaggtaaaaacgtcatttccatgtatcaatatgacgttttgaatgtcataaaagcaaatttc 9041871  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 55246029 - 55245971
Alignment:
Q  111 gtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    ||||||||||||||||||||| | |||||||||||||||| |||| |||| ||||||||    
T  55246029 gtaaaaacgtcatttccatgtgtcaatatgacgttttgaacgtcaaaaaaacaattttc 55245971  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 53687770 - 53687701
Alignment:
Q  100 taccgttggaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    ||||| ||||| |||||| |||||||  |||| | ||||||||||||||||||||||||||| |||||||    
T  53687770 taccgctggagataaaaatgtcatttttatgtgtcaatatgacgttttgaatgtcagaaaagtaattttc 53687701  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 53896780 - 53896839
Alignment:
Q  110 ggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    |||||||||||||||||||||| | | ||||| | |||| ||||||||||||||||||||    
T  53896780 ggtaaaaacgtcatttccatgtgtcattatgaagctttgtatgtcagaaaagcaattttc 53896839  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 53688500 - 53688529
Alignment:
Q  66 gaacggtagttaactaccgtcggataaatc 95  Q
    ||||||||||||||||||||||||||||||    
T  53688500 gaacggtagttaactaccgtcggataaatc 53688529  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 31868437 - 31868333
Alignment:
Q  67 aacggtagttaactaccgtcggataaatctaat--taccgttggaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaa 164  Q
    |||||||||||||||||| ||||| |||||| |  ||||||||| |||||||||||||||| ||||| | || |||||||||||||| ||| ||||||||    
T  31868437 aacggtagttaactaccgccggatcaatctagtggtaccgttgggggtaaaaacgtcattttcatgtgtcaacatgacgttttgaatatcaaaaaagcaa 31868338  T
Q  165 ttttc 169  Q
    |||||    
T  31868337 ttttc 31868333  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 37560773 - 37560829
Alignment:
Q  112 taaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaatttt 168  Q
    |||||| |||||||| || | | ||||||||||||||||||||| ||||| ||||||    
T  37560773 taaaaatgtcatttcaatatgtcaatatgacgttttgaatgtcaaaaaagtaatttt 37560829  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 4997165 - 4997227
Alignment:
Q  107 ggaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||    
T  4997165 ggaggtaaaaacgtcatttccatgtgtcaatatgaagttttgaatgtcaaaaaagcaattttc 4997227  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 4996474 - 4996420
Alignment:
Q  111 gtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaat 165  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  4996474 gtaaaaacgtcattttcatgtgtcaatatgacgttttgaatgtcagaaaagcaat 4996420  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 48850537 - 48850480
Alignment:
Q  112 taaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    |||||| ||||||| ||||| | ||||| ||||||||||||||||||| |||||||||    
T  48850537 taaaaatgtcattttcatgtgtcaatataacgttttgaatgtcagaaatgcaattttc 48850480  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 33223206 - 33223266
Alignment:
Q  100 taccgttggaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaa 160  Q
    |||||| |||||| |||| |||||||| |||| | ||||||||||||||||||||| ||||    
T  33223206 taccgtcggaggttaaaatgtcatttctatgtgtcaatatgacgttttgaatgtcaaaaaa 33223266  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 38052644 - 38052580
Alignment:
Q  105 ttggaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    ||||||||||||| ||||||||||| | | ||||||||||||| |||||||||||||||||||||    
T  38052644 ttggaggtaaaaatgtcatttccatatgttaatatgacgttttcaatgtcagaaaagcaattttc 38052580  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 22239254 - 22239304
Alignment:
Q  110 ggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaa 160  Q
    |||||||| ||||||| ||||| | |||||||| |||||||||||||||||    
T  22239254 ggtaaaaatgtcattttcatgtgtcaatatgacattttgaatgtcagaaaa 22239304  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 45243174 - 45243101
Alignment:
Q  96 taattaccgttggaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    ||||||| ||||||||||||||  |||||| ||||| | |||| ||  |||||||||||| |||||||| ||||    
T  45243174 taattactgttggaggtaaaaatatcatttacatgtgtcaataagaaattttgaatgtcaaaaaagcaactttc 45243101  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 1634938 - 1634993
Alignment:
Q  110 ggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaat 165  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||    
T  1634938 ggtaaaaacgtcatttccatgtgtcaatataacgttttgaatgtcagaaaagcaat 1634993  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 19802594 - 19802532
Alignment:
Q  107 ggaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    |||||||||||| |||||| ||||| | ||||||| ||||||||||||| ||||| |||||||    
T  19802594 ggaggtaaaaacatcattttcatgtgtcaatatgatgttttgaatgtcaaaaaagtaattttc 19802532  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 4222794 - 4222843
Alignment:
Q  110 ggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaa 159  Q
    |||||||||||||||| ||||| | |||||||||||||||| ||||||||    
T  4222794 ggtaaaaacgtcattttcatgtgtcaatatgacgttttgaaggtcagaaa 4222843  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 19803247 - 19803303
Alignment:
Q  110 ggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaatt 166  Q
    |||||||| ||||||| ||||| | ||||| |||||||||||||||||| |||||||    
T  19803247 ggtaaaaaagtcattttcatgtgtcaatattacgttttgaatgtcagaagagcaatt 19803303  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 4221655 - 4221601
Alignment:
Q  111 gtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaat 165  Q
    ||||||||||||||| ||||| | |||||||| ||||||| || |||||||||||    
T  4221655 gtaaaaacgtcattttcatgtgtcaatatgacattttgaaggttagaaaagcaat 4221601  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 21510839 - 21510783
Alignment:
Q  108 gaggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaa 164  Q
    |||| ||||| ||||||||||||||| | ||||| |||||||||||| |||||||||    
T  21510839 gaggcaaaaaagtcatttccatgtattattatgaagttttgaatgtcggaaaagcaa 21510783  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 44007569 - 44007626
Alignment:
Q  112 taaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    ||||||||||||||| || | | ||||||| ||||||||||||| |||| ||||||||    
T  44007569 taaaaacgtcatttctatatgtcaatatgatgttttgaatgtcaaaaaaacaattttc 44007626  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 22436425 - 22436484
Alignment:
Q  110 ggtaaaaacgtcatttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc 169  Q
    ||||||||| |||||||||||| | ||||||||  ||||||| |||||||| ||||||||    
T  22436425 ggtaaaaacatcatttccatgtgttaatatgacaatttgaatatcagaaaaacaattttc 22436484  T

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