View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19980_high_2 (Length: 411)

Name: NF19980_high_2
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19980_high_2
NF19980_high_2
[»] chr2 (3 HSPs)
chr2 (17-367)||(37838496-37838838)
chr2 (20-64)||(27328394-27328436)
chr2 (17-66)||(27328783-27328830)
[»] chr8 (4 HSPs)
chr8 (17-66)||(38107298-38107345)
chr8 (17-56)||(260176-260213)
chr8 (17-56)||(655708-655745)
chr8 (17-56)||(841443-841480)
[»] chr5 (1 HSPs)
chr5 (17-59)||(6331191-6331231)
[»] chr4 (2 HSPs)
chr4 (19-63)||(48551662-48551704)
chr4 (19-58)||(36444705-36444742)
[»] scaffold0004 (1 HSPs)
scaffold0004 (17-64)||(219085-219130)
[»] chr7 (1 HSPs)
chr7 (17-60)||(47271794-47271835)
[»] chr1 (2 HSPs)
chr1 (17-64)||(6711670-6711715)
chr1 (19-58)||(38473916-38473953)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 37838496 - 37838838
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgacctatattatatttgttaagttagtaattaaaccagaatccaatctaaaagagttacccattat 116  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37838496 atgaaaaacttaaaggacctttagat--gcatttgacctatattatatttgttaagttagtaattaaaccagaatccaatctaaaagagttacccattat 37838593  T
Q  117 atgagagagacttgatttatgtgtacacattgaccacttagaacttctatcattgtcatctcccttaaaagtcaacgccacaattatatcatttctaaaa 216  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37838594 atgagagagatttgatttatgtgtacacattgaccacttagaacttctatcattgtcatctcccttaaaagtcaacgccacaattatatcatttctaaaa 37838693  T
Q  217 tacttcgataactttagatttaatttatcaacaattaattttattcttacttttgttgctaaattaattttattctcataagacaagtctccattagaaa 316  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37838694 tacttcaataactttagatttaatttatcaacaattaattttattcttatttttgttgctaaattaattttattctcataagacaagtctccattagaga 37838793  T
Q  317 agatatactagtaattaagagaatgtagccaatgtattaatattacatatc 367  Q
    |||||      || |||||||||||||||||||||||||||||||||||||    
T  37838794 agata------tagttaagagaatgtagccaatgtattaatattacatatc 37838838  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 27328436 - 27328394
Alignment:
Q  20 aaaaacttaaaggacatttagatatgcatttgacctatattatat 64  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  27328436 aaaaacttaaaggacatttag--atgcatttgacctatattatat 27328394  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 27328783 - 27328830
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgacctatattatattt 66  Q
    |||||||||||||||||| |||||  |||||||||||||||| |||||||    
T  27328783 atgaaaaacttaaaggacctttag--atgcatttgacctataatatattt 27328830  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 38107298 - 38107345
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgacctatattatattt 66  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  38107298 atgaaaaacttaaaggacatttag--atgcatttgacctatattttattt 38107345  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 260176 - 260213
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgaccta 56  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  260176 atgaaaaacttaaaggacatttag--atgcatttgaccta 260213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 655745 - 655708
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgaccta 56  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  655745 atgaaaaacttaaaggacatttag--atgcatttgaccta 655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 841480 - 841443
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgaccta 56  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  841480 atgaaaaacttaaaggacatttag--atgcatttgaccta 841443  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 6331231 - 6331191
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgacctatat 59  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  6331231 atgaaaaacttaaaggacatttag--atgcatttgacctatat 6331191  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 48551704 - 48551662
Alignment:
Q  19 gaaaaacttaaaggacatttagatatgcatttgacctatattata 63  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||    
T  48551704 gaaaaacttaaaggacatttag--atgcatttgacctattttata 48551662  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 36444705 - 36444742
Alignment:
Q  19 gaaaaacttaaaggacatttagatatgcatttgacctata 58  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  36444705 gaaaaacttaaaggacatttag--atgcatttgacctata 36444742  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 219085 - 219130
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgacctatattatat 64  Q
    |||||||||||||||||| |||||  |||||||||| |||||||||||    
T  219085 atgaaaaacttaaaggacctttag--atgcatttgatctatattatat 219130  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 47271835 - 47271794
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgacctatatt 60  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||    
T  47271835 atgaaaaacttaaaggacatttag--atgcatttgacctttatt 47271794  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 6711670 - 6711715
Alignment:
Q  17 atgaaaaacttaaaggacatttagatatgcatttgacctatattatat 64  Q
    |||||||||||||||||| |||||  ||||||||||||||| ||||||    
T  6711670 atgaaaaacttaaaggacctttag--atgcatttgacctattttatat 6711715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 38473916 - 38473953
Alignment:
Q  19 gaaaaacttaaaggacatttagatatgcatttgacctata 58  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  38473916 gaaaaacttaaaggacatttag--atgcatttgacctata 38473953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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