View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19980_high_4 (Length: 350)
Name: NF19980_high_4
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19980_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 124 - 321
Target Start/End: Original strand, 6958885 - 6959082
Alignment:
| Q |
124 |
aaacttgttgaagaggggaaaataaaatacatcggtttgtctgaggcctcgcctgcaacaatcagaagagcacacgcagttcatccgataacagctgtgc |
223 |
Q |
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| T |
6958885 |
aaacttgttgaagagggcaaaataaaatacattggtttgtctgaagcctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgc |
6958984 |
T |
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| Q |
224 |
agttggagtggtcactgtggtcaagagatgtcgaggaagacgtaattccaacttgcaggtgtgatatttagtttacaaacattatgttttgttctcta |
321 |
Q |
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| T |
6958985 |
agttggagtggtcactgtggtcaagagatgttgaggaagacgtaattccaacttgcaggtgtgatatttagtttacaaatattatgttttgttctcta |
6959082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 91 - 321
Target Start/End: Complemental strand, 6922176 - 6921949
Alignment:
| Q |
91 |
ttggttttctttgtaagattgggggagctaaagaaacttgttgaagaggggaaaataaaatacatcggtttgtctgaggcctcgcctgcaacaatcagaa |
190 |
Q |
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| T |
6922176 |
ttggttttctttgtaagatcggag-agcttaaaaaacttgttgaagagggaaaaataaaatacattggtttgtctgaggcctcagctgcaacaatcagaa |
6922078 |
T |
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| Q |
191 |
gagcacacgcagttcatccgataacagctgtgcagttggagtggtcactgtggtcaagagatgtcgaggaagacgtaattccaacttgcaggtgtgatat |
290 |
Q |
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| T |
6922077 |
gagcacatgcagttcatccaataacagctgtgcagttggagtggtcactatggtcaagagatgtcgaggaagacataattccaacttgcaggtg-ga-at |
6921980 |
T |
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| Q |
291 |
ttagtttacaaacattatgttttgttctcta |
321 |
Q |
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| T |
6921979 |
ttagtttgcaaacattgtgttttgttatcta |
6921949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 91 - 321
Target Start/End: Original strand, 6956036 - 6956263
Alignment:
| Q |
91 |
ttggttttctttgtaagattgggggagctaaagaaacttgttgaagaggggaaaataaaatacatcggtttgtctgaggcctcgcctgcaacaatcagaa |
190 |
Q |
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| T |
6956036 |
ttggttttctttgtaagatcggag-agcttaaaaaacttgttgaagagggaaaaataaaatacattggtttgtctgaggcctcagctgcaacaatcagaa |
6956134 |
T |
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| Q |
191 |
gagcacacgcagttcatccgataacagctgtgcagttggagtggtcactgtggtcaagagatgtcgaggaagacgtaattccaacttgcaggtgtgatat |
290 |
Q |
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| T |
6956135 |
gagcacatgcagttcatccaataacagctgtgcagttggagtggtcactatggtcaagagatgtcgaggaagacataattccaacttgcaggtg-ga-at |
6956232 |
T |
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| Q |
291 |
ttagtttacaaacattatgttttgttctcta |
321 |
Q |
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| T |
6956233 |
ttagtttgcaaacattgtgttttgttatcta |
6956263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 70 - 316
Target Start/End: Complemental strand, 6969437 - 6969197
Alignment:
| Q |
70 |
tgtgtgatgacttcaacttttttggttttctttgtaagattgggggagctaaagaaacttgttgaagaggggaaaataaaatacatcggtttgtctgagg |
169 |
Q |
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| T |
6969437 |
tgtgtgatgacttcaactttt--ggtttt-tttctaagattgggg-agcttaagaaactcgttgaagagggaaaaataaaatacattggtttgtctgaag |
6969342 |
T |
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| Q |
170 |
cctcgcctgcaacaatcagaagagcacacgcagttcatccgataacagctgtgcagttggagtggtcactgtggtcaagagatgtcgaggaagacgtaat |
269 |
Q |
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| T |
6969341 |
cctcagcttcaacaatcagaagagcacatgcagttcatccaataacagctgtgcaattggagtggtcgctatggtcaagagatgtggaagaagaaataat |
6969242 |
T |
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| Q |
270 |
tccaacttgcaggtgtgatatttagtttacaaacattatgttttgtt |
316 |
Q |
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| T |
6969241 |
tccaacttgcaggtttg--atttagtttacaaacattatgttatgtt |
6969197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 6923979 - 6923942
Alignment:
| Q |
29 |
tatcaaataattataaatagacctgatgttggaaatat |
66 |
Q |
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| T |
6923979 |
tatcaaataattataaatagacctgatgttggagatat |
6923942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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