View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19980_high_8 (Length: 281)
Name: NF19980_high_8
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19980_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 19022855 - 19023101
Alignment:
| Q |
27 |
ctaattaaattaaatcaa-tcaataaccaaaacccaagatgcaaatcc-------taaataattatttgcgcaagtaatcataagcacaaatatattata |
118 |
Q |
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| T |
19022855 |
ctaataaaatgaaatcaagtcaataaccaaaacccaagatgcaaatccaaaatcataaataattatttgcgcaagtaatcgtaagcacaaatatattata |
19022954 |
T |
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| Q |
119 |
taaagagattccaggcacgtttgatcaataattaagtgagaaagataccaaacggggcagggggaaagcgaggtgaccatttgctgtccaaattctcagt |
218 |
Q |
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| T |
19022955 |
taaagagattccaggcacgtttgatcaataattaagtgagaaagataccaaacggggcagggggaaagcgaggtgaccatttgctgtcaaaattctcagt |
19023054 |
T |
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| Q |
219 |
ccaaaacagtataaaataacccccaaaactcatcaatgaaccaaaag |
265 |
Q |
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| T |
19023055 |
ccaaaacagtataaaataacccccaaaactcatcaatgaaccaaaag |
19023101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 27 - 265
Target Start/End: Complemental strand, 20731781 - 20731535
Alignment:
| Q |
27 |
ctaattaaattaaatcaa-tcaataaccaaaacccaagatgcaaatcc-------taaataattatttgcgcaagtaatcataagcacaaatatattata |
118 |
Q |
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||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20731781 |
ctaataaaatgaaatcaagtcaataaccaaaacccaagatgcaaatccaaaatcataaataattatttgcgcaagtaatcgtaagcacaaatatattata |
20731682 |
T |
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| Q |
119 |
taaagagattccaggcacgtttgatcaataattaagtgagaaagataccaaacggggcagggggaaagcgaggtgaccatttgctgtccaaattctcagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20731681 |
taaagagattccaggcacgtttgatcaataattaagtgagaaagataccaaacggggcagggggaaagcgaggtgaccatttgctgtcaaaattctcagt |
20731582 |
T |
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| Q |
219 |
ccaaaacagtataaaataacccccaaaactcatcaatgaaccaaaag |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20731581 |
ccaaaacagtataaaataacccccaaaactcatcaatgaaccaaaag |
20731535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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