View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19980_low_10 (Length: 238)
Name: NF19980_low_10
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19980_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15284051 - 15283829
Alignment:
| Q |
1 |
ttgaaggaatgtccaaaaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatctcatttacatgatccaaatatat |
100 |
Q |
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| T |
15284051 |
ttgaaggaatgtccaaaaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatttcatttacatgatccaaatatat |
15283952 |
T |
|
| Q |
101 |
tgtattatattgtggcccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccac |
200 |
Q |
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| T |
15283951 |
tgtattatattgtggcccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccac |
15283852 |
T |
|
| Q |
201 |
tttgcatcagagcctaagtggtg |
223 |
Q |
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||||||||||||||||| ||||| |
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| T |
15283851 |
tttgcatcagagcctaaatggtg |
15283829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 15287871 - 15288059
Alignment:
| Q |
14 |
caaaaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatctcatttacatgatccaaatatattgtattatattgt |
113 |
Q |
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| T |
15287871 |
caaaaaccaatggccagttgatacaacaatcatgtccatttgatcaatatcctttgcccacctctcattgacaagatccaaaaacattgtattataataa |
15287970 |
T |
|
| Q |
114 |
ggcccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccactt |
202 |
Q |
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| T |
15287971 |
ttcccttcatttgatctttcaacaccatgcactagaaatggggaccaatacaaagaaaaggtagcattatgagaaggaaagtgccactt |
15288059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 11807428 - 11807626
Alignment:
| Q |
2 |
tgaaggaatgtccaaaaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatctcatttacatgatccaaatatatt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||| ||||||| ||||| ||||||||||||||| |||| |
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| T |
11807428 |
tgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtatt |
11807527 |
T |
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| Q |
102 |
gtattatattgtggcccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccac |
200 |
Q |
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| T |
11807528 |
gtattataatttggcccttcctttcttctttgatcacccttcacaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccac |
11807626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 44248525 - 44248724
Alignment:
| Q |
17 |
aaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatctcatttacatgatccaaatatattgtattatattgtggc |
116 |
Q |
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||||||||||||||||||||| |||||| |||| |||| ||| |||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
44248525 |
aaaccaatgaccaaatgacaacacaatcgagtcaatttgatctatatccctagcccacatctgatttacttgatctaaatatattgtattatattgtgga |
44248624 |
T |
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| Q |
117 |
ccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccactttgcatcagagccta |
216 |
Q |
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||||| ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||||||||| |||||| || |||||||||||| |
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| T |
44248625 |
ccatcctttattctttgatcacccttcacaagaaaaggtgaccaataggctgtcaagtttgcgttgtaagaaggaaagtaccaccttccatcagagccta |
44248724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 51383223 - 51383037
Alignment:
| Q |
17 |
aaaccaatgaccaaatgacaaaacaatcaagtccattttatccatatcccttgcccacatctcatttacatgatccaaatatattgtattatattgtggc |
116 |
Q |
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|||||||||||||||||| || |||||||||||||||| ||| ||||| || |||||| ||||||| |||||||||||||| ||||||||||| |||| |
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| T |
51383223 |
aaaccaatgaccaaatgataacacaatcaagtccatttgatctatatctctagcccacctctcattgacatgatccaaatacattgtattataaattggc |
51383124 |
T |
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| Q |
117 |
ccatcattttttctttgatcacccttcacaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccacttt |
203 |
Q |
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|| |||||||||||| ||||| |||||||||| || |||||||| || | |||||||||||||||||||||||| ||||||||| |
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| T |
51383123 |
cctctgttttttctttgaacacccctcacaagaaaaggcgaccaataaaaagacaagtttgcattgtgagaaggaaagtaccacttt |
51383037 |
T |
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