View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19980_low_3 (Length: 405)
Name: NF19980_low_3
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19980_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 37497458 - 37497818
Alignment:
| Q |
18 |
aaaggaagaagagaaagtgtactcttggttatatacactggctcagtctgnnnnnnncttggtctttgagtatgttagatccactgaaagaggcaagtat |
117 |
Q |
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| T |
37497458 |
aaaggaagaagagaaagtgtactcttggttatatacactggctcagtctgaaaaaaacttggtctttgagtatgttagatccactgaaagaggcaattat |
37497557 |
T |
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| Q |
118 |
ctgcattctacaatactactttatcaatgaactttgattttataattatcattctttaatttttacaccctctccctacacccaataaaaataactccnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |
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| T |
37497558 |
ctgcattctacaatactactttatcaatgaactttgattttataattatcattctttaatttttacaccc-------------aataaagataacttctt |
37497644 |
T |
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| Q |
218 |
nnnnncaattgtatactgaaattaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgcctcttgcgctatgcaaactgtaactactgtgca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37497645 |
tttttcaattgtatactgaaattaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgccgcttgcgctatgcaaactgtaactactgtgca |
37497744 |
T |
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| Q |
318 |
aatttttcataaaagaaatttggagggagaaaattgatactagggctcaactaagattttcattgtggtctctg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37497745 |
aatttttcataaaagaaatttggagggagaaaattgatactagggctcaactaagattttcattgtggtttctg |
37497818 |
T |
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