View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19980_low_5 (Length: 323)

Name: NF19980_low_5
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19980_low_5
NF19980_low_5
[»] chr4 (3 HSPs)
chr4 (1-304)||(25551653-25551955)
chr4 (8-171)||(25551988-25552150)
chr4 (235-304)||(33248896-33248965)
[»] chr1 (3 HSPs)
chr1 (1-194)||(16066349-16066543)
chr1 (125-187)||(46559807-46559869)
chr1 (234-294)||(16068580-16068640)
[»] chr2 (2 HSPs)
chr2 (235-304)||(3944409-3944478)
chr2 (113-194)||(3944494-3944575)
[»] chr8 (2 HSPs)
chr8 (113-192)||(4022634-4022713)
chr8 (235-288)||(4022731-4022784)
[»] chr3 (2 HSPs)
chr3 (111-192)||(36542209-36542290)
chr3 (111-192)||(36566034-36566115)
[»] chr6 (4 HSPs)
chr6 (241-304)||(20644884-20644947)
chr6 (111-192)||(3174856-3174938)
chr6 (125-187)||(20644977-20645039)
chr6 (1-38)||(3174998-3175035)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 25551955 - 25551653
Alignment:
Q  1 aacacacaaacacattcaactcgccaaagtcgtaaaaggtttgtccatatatacaacaagtcttctaagctnnnnnnncaaggtatgtacttattgaatt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||| ||||||    
T  25551955 aacacacagacacattcaactcgccaaagtcgtaaaaggtttgtccatatatccaacaagtcttctaagctaaaaaa-caaggtatgtacttactgaatt 25551857  T
Q  101 ctattcatggtgcataatgcatatagttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaatttccttccacacacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  25551856 ctattcatggtgcataatgcatatagttcaaaactaagcataaaatcgatagacaaacatttactaaaatatgtaatattttaatttccttccacacacg 25551757  T
Q  201 aacttcaattttcttccatactctatcaatctgctctagctatctcaacaaataagtcattcaaagtaaaatcaagactgcaacaaatcttgtcacccat 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||    
T  25551756 aacttcaattttcttccatactctatcaatctgctatagctatctcaacaaataagtcattcaaagtaaaatcaaggctgcaacaaatcttgtcttccat 25551657  T
Q  301 atgc 304  Q
    ||||    
T  25551656 atgc 25551653  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 25552150 - 25551988
Alignment:
Q  8 aaacacattcaactcgccaaagtcgtaaaaggtttgtccatatatacaacaagtcttctaagctnnnnnnncaaggtatgtacttattgaattctattca 107  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||        ||||||  |||||| ||||||||||| |    
T  25552150 aaacacattcaactcgccaaagtcgtaaa-ggtttgtccctatatccaacaagtcttccaagctaaaaaaataaggtacatacttactgaattctattta 25552052  T
Q  108 tggtgcataatgcatatagttcaaaactaagcatgaaaccgatagacaaacatctactaaaata 171  Q
    ||||||||||| |||||||||||||||||||||| |||  |||| ||||||||| |||||||||    
T  25552051 tggtgcataatacatatagttcaaaactaagcataaaaatgatatacaaacatccactaaaata 25551988  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 33248965 - 33248896
Alignment:
Q  235 tctagctatctcaacaaataagtcattcaaagtaaaatcaagactgcaacaaatcttgtcacccatatgc 304  Q
    ||||||||||||||||||||||  |||||||| ||| |||||| |||||||||| ||||| ||| |||||    
T  33248965 tctagctatctcaacaaataagctattcaaagcaaactcaagattgcaacaaattttgtctcccttatgc 33248896  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 16066543 - 16066349
Alignment:
Q  1 aacacacaaacacattcaactcgcc-aaagtcgtaaaaggtttgtccatatatacaacaagtcttctaagctnnnnnnncaaggtatgtacttattgaat 99  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||   |||| |||||||| ||| ||  |       ||| | |  || | | | |||    
T  16066543 aacacacaaacacattaaactcgccaaaagtcgtaaaaggtttgtctcaatatccaacaagttttccaaaataaaaaaacaaaggacatattcactaaat 16066444  T
Q  100 tctattcatggtgcataatgcatatagttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaatttccttcca 194  Q
    |||||| ||  | |||||| |||||||||||||| ||||||| ||| |||||||||||| || ||||||||||||||||||||||||| ||||||    
T  16066443 tctatttatattacataatacatatagttcaaaagtaagcataaaaacgatagacaaacgtcaactaaaatacgtaatattttaattttcttcca 16066349  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 46559807 - 46559869
Alignment:
Q  125 agttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaattt 187  Q
    |||| |||| ||||||| ||| ||||||||||||||| |||||||  | ||||||||||||||    
T  46559807 agttaaaaagtaagcataaaaacgatagacaaacatccactaaaacgcctaatattttaattt 46559869  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 16068640 - 16068580
Alignment:
Q  234 ctctagctatctcaacaaataagtcattcaaagtaaaatcaagactgcaacaaatcttgtc 294  Q
    ||||||||||||||||||| |||  |||||||| ||| |||||| | |||||||| |||||    
T  16068640 ctctagctatctcaacaaacaagctattcaaagcaaattcaagaatacaacaaatgttgtc 16068580  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 3944478 - 3944409
Alignment:
Q  235 tctagctatctcaacaaataagtcattcaaagtaaaatcaagactgcaacaaatcttgtcacccatatgc 304  Q
    ||||||||||||||||||||||  ||| |||| ||| ||||||||||||||||| ||||| ||| |||||    
T  3944478 tctagctatctcaacaaataagctattgaaagcaaactcaagactgcaacaaattttgtctcccttatgc 3944409  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 3944575 - 3944494
Alignment:
Q  113 cataatgcatatagttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaatttccttcca 194  Q
    |||||| |||||| ||||||| ||||||| ||| ||||||||||||||| |||||||  | |||| |||| |||| ||||||    
T  3944575 cataatacatataattcaaaagtaagcataaaaacgatagacaaacatccactaaaacgcctaatttttttattttcttcca 3944494  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 4022634 - 4022713
Alignment:
Q  113 cataatgcatatagttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaatttccttc 192  Q
    |||||| | ||||||||||||  |||||| ||| ||||||||||||||||||||||   | |||||||||||||| ||||    
T  4022634 cataatacctatagttcaaaagcaagcataaaaacgatagacaaacatctactaaagcgcctaatattttaattttcttc 4022713  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 4022731 - 4022784
Alignment:
Q  235 tctagctatctcaacaaataagtcattcaaagtaaaatcaagactgcaacaaat 288  Q
    |||||||||||||||||| ||| ||||||||  ||| |||||||||||||||||    
T  4022731 tctagctatctcaacaaacaagccattcaaaccaaactcaagactgcaacaaat 4022784  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 36542209 - 36542290
Alignment:
Q  111 tgcataatgcatatagttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaatttccttc 192  Q
    |||||||| | | ||||||||||  |||||| ||| ||||||||||||||| || |||| || |||||||||||||| ||||    
T  36542209 tgcataatacgtgtagttcaaaagcaagcataaaaacgatagacaaacatccaccaaaacacctaatattttaattttcttc 36542290  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 36566115 - 36566034
Alignment:
Q  111 tgcataatgcatatagttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaatttccttc 192  Q
    |||||||| | ||||||||||||  |||||| ||| |||||||||||| || || |||| || |||||||||||||| ||||    
T  36566115 tgcataatacgtatagttcaaaagcaagcataaaaacgatagacaaacgtccaccaaaacacctaatattttaattttcttc 36566034  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 20644947 - 20644884
Alignment:
Q  241 tatctcaacaaataagtcattcaaagtaaaatcaagactgcaacaaatcttgtcacccatatgc 304  Q
    |||||||| |||||||| |||||||| ||| | ||||||||||||||| ||||| ||| |||||    
T  20644947 tatctcaataaataagttattcaaagcaaactgaagactgcaacaaattttgtctcccttatgc 20644884  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 3174938 - 3174856
Alignment:
Q  111 tgcataatgcatatagttca-aaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaatttccttc 192  Q
    |||||||| |||||| |||| ||| || |||| ||| | ||||||| ||||| ||| ||||||||||||||||||||| ||||    
T  3174938 tgcataatacatataattcataaagtatgcataaaaacaatagacagacatccactcaaatacgtaatattttaattttcttc 3174856  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 20645039 - 20644977
Alignment:
Q  125 agttcaaaactaagcatgaaaccgatagacaaacatctactaaaatacgtaatattttaattt 187  Q
    |||| |||| ||||||| ||| ||||||||||||||| |||||||  | ||||||||||||||    
T  20645039 agttaaaaagtaagcataaaaacgatagacaaacatccactaaaacgcctaatattttaattt 20644977  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3175035 - 3174998
Alignment:
Q  1 aacacacaaacacattcaactcgccaaagtcgtaaaag 38  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  3175035 aacacacaaacacattaaactcaccaaagtcgtaaaag 3174998  T

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