View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19980_low_6 (Length: 309)
Name: NF19980_low_6
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19980_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 3924633 - 3924471
Alignment:
| Q |
19 |
aagcactagaggattaaaattttccctgttagaagaagccaacatgtaattgaatcaaaacaaaacaaatgcatcttagtttaaatagcaattgaaataa |
118 |
Q |
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| T |
3924633 |
aagcactagaggatttaaatttcccctgttagaagaagccaacatgtaattgaatcaacccaaaacaaatgcatcttagtttaaatagcaattgaaataa |
3924534 |
T |
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| Q |
119 |
cattcattattcatctagttcaaaagaatacttaatctctcaaaccaaatcctcacatcctat |
181 |
Q |
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| T |
3924533 |
cattcattattcatctagttcaaaaaaatacttgatgtctcaaacaaaatcctcacatcctat |
3924471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 3908569 - 3908455
Alignment:
| Q |
67 |
attgaatcaaaacaaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatctagttcaaaagaatacttaatctctcaaaccaa |
166 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
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| T |
3908569 |
attgaatcaaaccaaaacaaatgcatcttagtttaattagcaattgaaagaacattcattattcatatagttcaaaagaatacttaatctgtcaaatcaa |
3908470 |
T |
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| Q |
167 |
atcctcacatcctat |
181 |
Q |
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| T |
3908469 |
aacctcacatcctat |
3908455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 3924420 - 3924357
Alignment:
| Q |
235 |
gttttctccactaattcaagtgactcaaagtcttcaatccctttattcatttgtttaaaccttt |
298 |
Q |
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| T |
3924420 |
gttttctccactaattcaaatgactcaaagtcttcaatccctttattcatttgtttgaaccttt |
3924357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 3908404 - 3908338
Alignment:
| Q |
235 |
gttttctccactaattcaagtgactcaaagtcttcaatccctttattcatttgtttaaacctttgct |
301 |
Q |
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| T |
3908404 |
gttttctccactatttcaagtgactcaaagtcttccatccatttattcatttgtttgaacctttgct |
3908338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 26052887 - 26052784
Alignment:
| Q |
79 |
caaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatctagttcaaaagaatactt-aatctctcaaaccaaatcctcacatc |
177 |
Q |
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||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||| |
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| T |
26052887 |
caaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcatctagttcaaaagaatacttgattgtctcaaacaaaatcctcacatc |
26052788 |
T |
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| Q |
178 |
ctat |
181 |
Q |
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|||| |
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|
| T |
26052787 |
ctat |
26052784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 32028422 - 32028283
Alignment:
| Q |
50 |
gaagaagccaacatgtaattgaatc--------aaaacaaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatctagttcaa |
141 |
Q |
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||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
32028422 |
gaagaagccaacatgtaattgaatcgttcaatgaaaccaaaacaaa-gcatcttagtttaaataacaattgaaaaaacattcattattcatctagttcaa |
32028324 |
T |
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| Q |
142 |
aagaatact-taatctctcaaaccaaatcctcacatcctat |
181 |
Q |
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||||||||| | | |||||||| ||||||||||||||||| |
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| T |
32028323 |
aagaatactcgattgtctcaaacaaaatcctcacatcctat |
32028283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 13858814 - 13858868
Alignment:
| Q |
79 |
caaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatc |
133 |
Q |
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||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
13858814 |
caaaacaaaagcatcttagtttaaataacaatttaaaaaacattcattattcatc |
13858868 |
T |
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