View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19980_low_7 (Length: 307)
Name: NF19980_low_7
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19980_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 130 - 294
Target Start/End: Complemental strand, 36920558 - 36920394
Alignment:
| Q |
130 |
ttagaaatttcttatgcagtagcgtcccaaaagttaagctgaatgtaaatatcagaaaaaccaaaattattaaattcatataagttataaagaaagtagt |
229 |
Q |
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| T |
36920558 |
ttagaaatttcttatgcagtagcgtcccaaaagttaagctgaatgtaaatatcagaaaaaccaaaattattaaattcatataagttataaacaaagtagt |
36920459 |
T |
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| Q |
230 |
atatacctgcgattgatctagatgcgtaattaagaaactgagaataagcaacgaactcggcaata |
294 |
Q |
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| T |
36920458 |
atatacctgcgattgatctagatgcgtaattgagaaactgagaataagcaacgaactcggcaata |
36920394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36920690 - 36920626
Alignment:
| Q |
1 |
cattccttatttagttatccgtacatcaatgtccttgccaattaggattcatttttaatactact |
65 |
Q |
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| T |
36920690 |
cattccttatttagttatccgtacatcaatgtccttgccaattaggattcatttttaatactact |
36920626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 36920618 - 36920577
Alignment:
| Q |
96 |
ttaattatgttgtagaaaataatgcatctaaaacttagaaat |
137 |
Q |
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| T |
36920618 |
ttaattatgttgtagaaaataatgcatctaaaaattagaaat |
36920577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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