View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19980_low_9 (Length: 261)
Name: NF19980_low_9
Description: NF19980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19980_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 25997548 - 25997787
Alignment:
| Q |
20 |
acctgtttcagcgattcgaacgaaagggctcgaacttcgacgccagaagcaagagtgttgatgacttgatttgttctggtttgaagtgttgaatcaaatg |
119 |
Q |
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| T |
25997548 |
acctgtttcagggattcgaacgaaagggctcgaacttcgacgccagaagcaagagtgttgatgacttgatttgttctggtttgaagtgttgaatcaaatg |
25997647 |
T |
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| Q |
120 |
tctgcaaatctgtgtcaattttgcaggctgcttcataggaacttagctcagttttgtagtgcaattctgttgttgtgaagttaacagcagatgaattttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25997648 |
tctgcaaatctgtgtcaattttgcaggctgcttcataggaacttagctcagttttgtagtgcaattctgttgttgtgaagttaacagcagatgaagtttc |
25997747 |
T |
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| Q |
220 |
ttgagtctttttgctcatattactcccctttgctactcca |
259 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| |
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| T |
25997748 |
ttgagtctttttgctcatattactccccattgcaactcca |
25997787 |
T |
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