View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19981_high_1 (Length: 774)
Name: NF19981_high_1
Description: NF19981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19981_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 15 - 756
Target Start/End: Original strand, 29090938 - 29091683
Alignment:
| Q |
15 |
cataggtcacttctttataggattatcctaaacaactttttgaaacctcgaatccccatttcctgacatgattctcttgtcataggtttctatgtagtag |
114 |
Q |
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| T |
29090938 |
cataggtcacttctttataggattatcctaaccaactttttgaaacctcgaatccc-atttcctgacatgattctcttgtcataggtttctatatag--- |
29091033 |
T |
|
| Q |
115 |
atttctttgataaagatatt----------tccttatttgtacattttcatttttctcatgaaatattagtaaaggcaaagaattgcttctaagttaggc |
204 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29091034 |
atttctttgataaagatattcagatagatttctttatttgtacattttcatttttctcatgaaata---gtaaaggcaaagaattgcttctaagttaggc |
29091130 |
T |
|
| Q |
205 |
tatccacaataaaagaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaac |
304 |
Q |
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| T |
29091131 |
tatccacaataaaagaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaac |
29091230 |
T |
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| Q |
305 |
tcataattcatcaaaacacaaaactactctatattacaaatatgagatacattatatatgcattatttctacatcacatattatcaattctttctatttc |
404 |
Q |
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| T |
29091231 |
tcataattcatcataagacaaaactactctatattacaaatatgagaaacattatatatgcattatttctacatcacatattatcaattctttctatttc |
29091330 |
T |
|
| Q |
405 |
tttcccaaaggacacaaccataaaataacaaacaacta-aatcattcataatgccaagagttgtaccttggaaactcttaagtttcannnnnnnnnnnnn |
503 |
Q |
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| T |
29091331 |
tttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttcattttttttgtttt |
29091430 |
T |
|
| Q |
504 |
nactttgttatccttttctttctctaccatattcaccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggcacgccagcg |
603 |
Q |
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| T |
29091431 |
tactttgttatctttttctttctctaccatattcaccataacaaacaattgcccttatactatatggccaggcacactcgccggtgcaggcacgtcagcg |
29091530 |
T |
|
| Q |
604 |
cttccatcaactggatttcagcttgactcaagtcaagctgcaaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactggttgcacat |
703 |
Q |
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| T |
29091531 |
cttccatcaactggatttcagcttgactcaggtcaagctgcgaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactggttgcacat |
29091630 |
T |
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| Q |
704 |
ttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagactt |
756 |
Q |
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| T |
29091631 |
ttgatgcatccggaattggcaaatgccaaacgggtgattgtggtggaagactt |
29091683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 50 - 595
Target Start/End: Original strand, 29083649 - 29084201
Alignment:
| Q |
50 |
ctttttgaaacctcgaatccccatttcctgacatgattctcttgtcataggtttctatgtagtagatttctttgataaagat----------atttcctt |
139 |
Q |
| |
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| T |
29083649 |
ctttttgcaatctcgaatccccatttcctgacatgattttcttgtcataggtttccatatag---atttctttgataaagattttcatatagatttcctt |
29083745 |
T |
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| Q |
140 |
atttgtacattttcatttttctcatgaaatattagtaaaggcaaagaattgcttctaagttaggctatccacaataaaagaaatactaaacccataaagt |
239 |
Q |
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| T |
29083746 |
atttgtacattttcatttttctcatgaaata---gcaaaggcaaagaattgcttctaagttaggctatccacaatataagaaatacttaacccataaagt |
29083842 |
T |
|
| Q |
240 |
tcatt-ttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaactcataattcatcaaaacacaaaactactctatat |
338 |
Q |
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| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || || || | ||||| |
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| T |
29083843 |
ttaatcttgcggctaagaatttcatcaaagtaaagtaacgttttggttttttaataccaaagaaactcataattcatcattgctcacaaatagtttatat |
29083942 |
T |
|
| Q |
339 |
tacaaatatgagatacattatatatgcattatttctacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaataacaaaca |
438 |
Q |
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| T |
29083943 |
tacaaatatgagaagcattatatatccattatttctacatcaccatttatcaatattttctatttcttccccaaaggacacaaccataaaataacaaaca |
29084042 |
T |
|
| Q |
439 |
acta-aatcattcataatgccaagagttgtaccttggaaactcttaagtttcannnnnnnnnnnnnnactttgttatc-cttttctttctctaccatatt |
536 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||||| |||||| |
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| T |
29084043 |
actataatcattcataatgccaagagttgtaccttggaaactcctaagtttcatttattttgtttttactttattatcttttttctatctctagcatatt |
29084142 |
T |
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| Q |
537 |
caccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggca |
595 |
Q |
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|||| |||||||||||| |||||||||||||| | |||||||||||||||||||||||| |
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| T |
29084143 |
caccgtaacaaacaatttcccttatactatattgaccggcacactcgccggtgcaggca |
29084201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 697 - 756
Target Start/End: Original strand, 29084285 - 29084344
Alignment:
| Q |
697 |
tgcacatttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagactt |
756 |
Q |
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|||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
29084285 |
tgcacatttgatgcattaggaattgacaagtgccaaacaggtgattgtggtggaagactt |
29084344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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