View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19981_high_5 (Length: 285)
Name: NF19981_high_5
Description: NF19981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19981_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 1341533 - 1341270
Alignment:
| Q |
14 |
cattatcttcaatatgacatattactcaacaaaaaccagtttttaccaattctctaccacaccatctacctcaaacaaaccctgtcttctgccaaacaca |
113 |
Q |
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| T |
1341533 |
cattatcttcaatatgacatattactcaacaaaaaccagtttttaccaattctctaccacaccatctacctcaaacaaaccctgtcttctgccaaacaca |
1341434 |
T |
|
| Q |
114 |
agccaaccnnnnnnncaaaacataaactttgttcttccaacaagcatcaacnnnnnnnnccagacatggaagaaaccaccagtgttagttataatcaaaa |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
1341433 |
agccaaccaaaaaaacaaaacataaactttgttcttccaacaagcatcaacaaaaaaaaccagacatggaagaaaccactagtgttagttataatcaaaa |
1341334 |
T |
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| Q |
214 |
ttatagtggatcaccaataaccaacatacctcaagattacatcttcactattatccttcttctc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1341333 |
ttatagtggatcaccaataaccaacatacctcaagattacatcttcactattatccttcttctc |
1341270 |
T |
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