View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19981_high_7 (Length: 272)
Name: NF19981_high_7
Description: NF19981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19981_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 27260641 - 27260398
Alignment:
| Q |
14 |
atatggtcctgatttaataccaggatttggtgagattggggcaaagaggtcatcaaagactcaaagcatgccatgtctaaagtctaaacatagattttta |
113 |
Q |
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| T |
27260641 |
atatggtcctgatttaataccaggatttggtgagattggggtaaagaggtcatcaaagactcaaagcatgccatgtctaaagtctaaacatagattttta |
27260542 |
T |
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| Q |
114 |
atgcatcaattccctctgctaaatgttaaggcagaatatgttgattttgtagttgttgagaccaaaaattttccacatcttgtagaatagaatgtgttgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27260541 |
atgcatcaattccctctgctaaatgttaaggcagaatatgctgatcttgtagttgttgagaccaaaaattttctacatcttgtagaatagaatgtgttgc |
27260442 |
T |
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| Q |
214 |
ttggtaccgtaaaaaagaacctagaatattcccctggtacttta |
257 |
Q |
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| T |
27260441 |
ttggtactgtaaaaaagaacctagaatattcccctggtacttta |
27260398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 21192992 - 21192801
Alignment:
| Q |
14 |
atatggtcctgatttaataccaggatttggtgagattggggcaaagaggtcatcaaagactcaaagcatgccatgtctaaagtctaaacatagattttta |
113 |
Q |
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| T |
21192992 |
atatggtcctgatttaataccaggatttggtgagattggggtaaccaagtcatcaaag--------catgccatgtcttaaca-tatactttcaaattca |
21192902 |
T |
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| Q |
114 |
atgcatcaattccctctgctaaatgttaaggcagaatatgttgattttgtagttgttgagaccaaaaattttccacatcttgtagaatagaatgtgttgc |
213 |
Q |
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| T |
21192901 |
atgcatcaattccctctgctaaatgttgaagcagaatatgctgattt-gtagttcttgagaccaaaaaaattctacatcttgtagaagagaatgtgttgc |
21192803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 27248783 - 27248592
Alignment:
| Q |
14 |
atatggtcctgatttaataccaggatttggtgagattggggcaaagaggtcatcaaagactcaaagcatgccatgtctaaagtctaaacatagattttta |
113 |
Q |
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| T |
27248783 |
atatggtcctgatttaatatcaggatttggtgagattggggtaaccaagtcatcaaag--------catgccatgtcttaaca-tatactttcaaattca |
27248693 |
T |
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| Q |
114 |
atgcatcaattccctctgctaaatgttaaggcagaatatgttgattttgtagttgttgagaccaaaaattttccacatcttgtagaatagaatgtgttgc |
213 |
Q |
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| T |
27248692 |
acgcatcaattccctctgctaaatgttgaagcagaatatgctgattt-gtagttcttgagaccaaaaaaattctacatcttgtagaagagaatgtgttgc |
27248594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 21203625 - 21203573
Alignment:
| Q |
205 |
atgtgttgcttggtaccgtaaaaaagaacctagaatattcccctggtacttta |
257 |
Q |
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| T |
21203625 |
atgtgttgcttggtactgtaaaaaagaacctagaatattcccctgctacttta |
21203573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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