View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19981_low_2 (Length: 678)
Name: NF19981_low_2
Description: NF19981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19981_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 190 - 660
Target Start/End: Original strand, 6000609 - 6001079
Alignment:
| Q |
190 |
atgggtaccaaatttcttgtcacgtggttcctatgatcttaatttcataccatactatagtatatattaaatctgcgtacgtgcgcatgatgcacccata |
289 |
Q |
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| T |
6000609 |
atgggtaccaaatttcttgtcacgtggttcctatgatcttaatttcataccatactatagtatatattaaatctgcgtacgtgcgcatgatgcacccata |
6000708 |
T |
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| Q |
290 |
tctcataatgagttacttatacatataaaattagaccaaattttcatcataaaaatagaccaaatatatatgtataaataactgaataaagatcagtgct |
389 |
Q |
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| T |
6000709 |
tctcataatgagttacttatacatataaaattagaccaaattttcatcataaaaatagaccaaatatatatgtataaataactgaataaagatcagtgct |
6000808 |
T |
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| Q |
390 |
attcttgcactattagtagtttgaatgtgttctttttgtcttatattgcactaaaactaacacacgagtgtttggcggtggtgacactaaagtatgagat |
489 |
Q |
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| T |
6000809 |
attcttgcactattagtagtttgaatgtgttctttttgtcttatattgcactaaaactaacacacgagtgtttggcggtggtgacactaaagtatgagat |
6000908 |
T |
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| Q |
490 |
gactggtgagatgacaaatttcacattcttgtgttgaaaaataggttggttggttatatattttttgggaccttacttctaaaaggtccaccaccaataa |
589 |
Q |
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| T |
6000909 |
gactggtgagatgataaatttcacattcttgtgttgaaaaataggttggttggttatatattttttgggaccttacttctaaaaggtccaccaccaataa |
6001008 |
T |
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| Q |
590 |
ctgcggtgctggtttaggaaaatgaggtacacaaagctccaaaattgtccactaatacaagatgggattgg |
660 |
Q |
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| T |
6001009 |
ctgcggtgctggtttaggaaaatgaggtacacaaagctccaaaattgtccactaatacaagatgggattgg |
6001079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 6000470 - 6000535
Alignment:
| Q |
13 |
attatactaatacacagtttaaagatnnnnnnntactgcaccaataaaggtgaaagggatacttgaa |
79 |
Q |
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| T |
6000470 |
attatactaatacacagtttaaagataaaaaa-tactgcaccaataaaggtgaaagggatacttgaa |
6000535 |
T |
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