View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19981_low_3 (Length: 408)
Name: NF19981_low_3
Description: NF19981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19981_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 398
Target Start/End: Complemental strand, 33998948 - 33998569
Alignment:
| Q |
21 |
agatagaaagaggtattttttgtcctaatttaggaggtaaaatcctcttgcagaccagccactcactaggttgaaatgcaataatgcaatcaatacagtg |
120 |
Q |
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| T |
33998948 |
agatagaaagaggtgttttttgtcctaatttaggaggtaaaatcctcttgcagaccagccactccctaggttgaaatgcaataatgcaatcaatacagtg |
33998849 |
T |
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| Q |
121 |
tgcaagtaagtatagaaacctttgaaccaaacaaaacattgttgaagtgttgtaaattataagtctcaccttggatagactatcaaatgttgaacaagat |
220 |
Q |
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| T |
33998848 |
tgcaagtaagtatagaaacctttgaaccaaacaaaacattgttgaagtgttgtaaattataagtcccaccttggatagaccatcaaatgttgaacaagat |
33998749 |
T |
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| Q |
221 |
ataaaagaaaagagacatgccaaaaaataataagtc--gcggaaataagggagaaactgttacaacaagtgagtgaaaattattagtgatttctctcttg |
318 |
Q |
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| T |
33998748 |
ataaaagaaaagagacatgccaaaaaataataagtcttgcggaaataagggagaaactgttagaacaagtgagtgaaaattattagtgatttctctcttg |
33998649 |
T |
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| Q |
319 |
ttttcacgatactannnnnnncactttccaaacagtttacctctttatccagatttgtaaattcctcatttatattcttc |
398 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33998648 |
ttttcacgatactatttttttcactttccaaactgtttacctctttatccagatttgtaaattcctcatttattttcttc |
33998569 |
T |
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