View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19981_low_4 (Length: 367)
Name: NF19981_low_4
Description: NF19981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19981_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 33998991 - 33999343
Alignment:
| Q |
1 |
attcatgagtttattttaagtgatattataaatattttatacaacatgtggatccatagcttagtgcaagatttaaaatacgtgagaaattttaatttgg |
100 |
Q |
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| T |
33998991 |
attcatgagtttattttaagcgatattataaatattttatacaacatgtggatccatagcttagtgcaagatttaaaatacgtgagaaattttaatttgg |
33999090 |
T |
|
| Q |
101 |
cagggtattagaaatagcatagtttttaagaaaaccagtatgaagccnnnnnnnn-cagttaagaatgggatatgatcaatatcaaatttcaattaattc |
199 |
Q |
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| T |
33999091 |
cagggtattagaaatagcatagttttttagaaaaccagtatgaagccaaaaaaaaacagttaagaatgggatatgatcaatatcaaatttcaattaattc |
33999190 |
T |
|
| Q |
200 |
aacttaagattgactgtattcgaaaaactaaatagtgtttcatttttagccaagcatctttattgaaaaagcacttaacatgacttgaagctaacatttt |
299 |
Q |
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| T |
33999191 |
aacttaagattgactgtattcgaaaaactaaatagtgtttcatttttagccaagcatctttattgaaaaagcacttaacatgacttgaagctaacatttt |
33999290 |
T |
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| Q |
300 |
ctatgatgatcacgtgcaagagttgaagctagacgatattaacaaggtcaaac |
352 |
Q |
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| T |
33999291 |
ctatgatgatcacgtgcaagagttgaagctagatgatattaacaaggtcaaac |
33999343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 34002544 - 34002679
Alignment:
| Q |
2 |
ttcatgagtttattttaagtgatattataaat-attttatacaacatgtggatccatagcttagtgcaagatttaaaatacgtgagaaattttaatttgg |
100 |
Q |
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| T |
34002544 |
ttcatgagtttattc-aagtgatattatagattattttatacaacatg--gatccatagcttagttcaagatttaaaaaacgtgag-aattttaatttgg |
34002639 |
T |
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| Q |
101 |
cagggtattagaaatagc--atagtttttaagaaaaccagt |
139 |
Q |
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| T |
34002640 |
taggggatgacaaatagcatatagttttt-agaaaaccagt |
34002679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 34002718 - 34002752
Alignment:
| Q |
179 |
atatcaaatttcaattaattcaacttaagattgac |
213 |
Q |
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| T |
34002718 |
atatcaaatttcaattaattcaacttaagattgac |
34002752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 34002799 - 34002839
Alignment:
| Q |
243 |
ttttagccaagcatctttattgaaaaagcacttaacatgac |
283 |
Q |
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| T |
34002799 |
ttttagccgagcacctttattgaaaaagcacctaacatgac |
34002839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 351
Target Start/End: Complemental strand, 10019787 - 10019695
Alignment:
| Q |
258 |
tttattgaaaaagcacttaacatgacttgaa-gctaaca-ttttctatgatgatcacgtgcaagagttgaagctagacgatattaacaaggtcaaa |
351 |
Q |
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|||| ||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||| ||||||||| | ||| |||||||||||||| |
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| T |
10019787 |
tttaatgaaaaagcacttaacatgacatgaaagctaacacttttctatgat---cacgtgcaagaattgaagctaaaagatgttaacaaggtcaaa |
10019695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 10019904 - 10019845
Alignment:
| Q |
35 |
ttttatacaacatgtggatccatagcttagtgcaagatttaaaatacgtgagaaattttaat |
96 |
Q |
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|||||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||| |
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| T |
10019904 |
ttttatacaacatg--gatccatagtttagtgcaagattttaaaaatgtgagaaattttaat |
10019845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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