View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19982_low_1 (Length: 659)
Name: NF19982_low_1
Description: NF19982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19982_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 610; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Original strand, 48592125 - 48592754
Alignment:
| Q |
18 |
cgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48592125 |
cgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgag |
48592224 |
T |
|
| Q |
118 |
ctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgatgatgcaacttttgctttcgctccttatgggacttattggaaattta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592225 |
ctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgatgatgcaacttttgctttcgctccttatgggacttattggaaattta |
48592324 |
T |
|
| Q |
218 |
ttaaaaagctcagcaccactgagctcttgggtaatcgaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592325 |
ttaaaaagctcagcaccactgagctcttgggtaatcgaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggc |
48592424 |
T |
|
| Q |
318 |
aaataagtctaaggtggaagaaagtgtgaacctcacacaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgttca |
417 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48592425 |
aaataagtctaaggcagaagaaagtgtgaacctcacacaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgctca |
48592524 |
T |
|
| Q |
418 |
ggaacagataaccaagcagaacaagtaagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaaga |
517 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592525 |
ggaacagataaccaagcagaacaagttagggctttggttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaaga |
48592624 |
T |
|
| Q |
518 |
actttgacttgcaaggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaag |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592625 |
actttgacttgcaaggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaag |
48592724 |
T |
|
| Q |
618 |
ggaagccaagctaatagatggtggtggtga |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48592725 |
ggaagccaagctaatagatggtggtggtga |
48592754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Original strand, 48601820 - 48602449
Alignment:
| Q |
18 |
cgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601820 |
cgatcaatatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgag |
48601919 |
T |
|
| Q |
118 |
ctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgatgatgcaacttttgctttcgctccttatgggacttattggaaattta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48601920 |
ctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgatgatgcaacttttgctttcgctccttatgggacttattggaaattta |
48602019 |
T |
|
| Q |
218 |
ttaaaaagctcagcaccactgagctcttgggtaatcgaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602020 |
ttaaaaagctcagcaccactgagctcttgggtaatcgaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggc |
48602119 |
T |
|
| Q |
318 |
aaataagtctaaggtggaagaaagtgtgaacctcacacaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgttca |
417 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48602120 |
aaataagtctaaggcagaagaaagtgtgaacctcacacaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgctca |
48602219 |
T |
|
| Q |
418 |
ggaacagataaccaagcagaacaagtaagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaaga |
517 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602220 |
ggaacagataaccaagcagaacaagttagggctttggttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaaga |
48602319 |
T |
|
| Q |
518 |
actttgacttgcaaggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaag |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602320 |
actttgacttgcaaggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaag |
48602419 |
T |
|
| Q |
618 |
ggaagccaagctaatagatggtggtggtga |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48602420 |
ggaagccaagctaatagatggtggtggtga |
48602449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 24 - 647
Target Start/End: Complemental strand, 23232201 - 23231578
Alignment:
| Q |
24 |
atatggccctttaatatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcact |
123 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23232201 |
atatggacctcttatatcccttcgacttggctctgctcgatttatagttgttaacactccatcactcgccaaagagtttctcaagacacatgagctcact |
23232102 |
T |
|
| Q |
124 |
tattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23232101 |
tattctcaccgtaaaatgagcatagccatcaacgtagttgcctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaa |
23232002 |
T |
|
| Q |
224 |
agctcagcaccactgagctcttgggtaatcgaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
23232001 |
agctcagcaccactgagctcttgggtaaccgaaccattgggcaattcctaccgattcgaacccaagaactcgatgaattcattcaaacattgacaaataa |
23231902 |
T |
|
| Q |
324 |
gtctaaggtggaagaaagtgtgaacctcacacaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaaca |
423 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23231901 |
atctaaggccagagaaagtttgaacctcacacaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgctcaggaaca |
23231802 |
T |
|
| Q |
424 |
gataaccaagcagaacaagtaagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttg |
523 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
23231801 |
gataaccaagcagaacaagttagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttg |
23231702 |
T |
|
| Q |
524 |
acttgcaaggttttaaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagc |
623 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23231701 |
acttgcaaggttttaaaaaaagggccttggacatacacaagaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagc |
23231602 |
T |
|
| Q |
624 |
caagctaatagatggtggtggtga |
647 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23231601 |
caagctaatagatggtggtggtga |
23231578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 37 - 627
Target Start/End: Complemental strand, 23224855 - 23224265
Alignment:
| Q |
37 |
atatcccttcgacttggctcctctcaatttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgta |
136 |
Q |
| |
|
||||||||||||||||| || || ||||||| |||||| | ||||||||||| |||||||||||||| ||| | ||||| ||||||| ||||| |
|
|
| T |
23224855 |
atatcccttcgacttggttctgttccatttatcgttgttagttccccatcactcgcaaaagagtttctcaaaacaaacgagcttgtttattcttcccgta |
23224756 |
T |
|
| Q |
137 |
aaatgagcatagccatcaacgtagttgcctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccac |
236 |
Q |
| |
|
|||||| ||| ||||||||| ||||| ||| |||||||| ||||||||||| || ||||||||| | ||||||||||| || |||||||| || ||| |
|
|
| T |
23224755 |
aaatgaacattgccatcaacacagttgtctacgatgatgctacttttgcttttgccccttatggggcatattggaaattcatcaaaaagcttagtacctt |
23224656 |
T |
|
| Q |
237 |
tgagctcttgggtaatcgaaccatggcacaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaa |
336 |
Q |
| |
|
||||||||| || || || || || | |||||| |||| |||||||| | ||||||| | || |||||||||||||||| |||||| || ||||| ||| |
|
|
| T |
23224655 |
tgagctcttaggcaaccggactattggacaattcttaccaattcgaactcgagaactcaacgagttcattcaaactttggaaaataaatccaaggttgaa |
23224556 |
T |
|
| Q |
337 |
gaaagtgtgaacctcacacaagctttgataaagctttccaacaacataatatcacggatgatgttgagtattgattgttcaggaacagataaccaagcag |
436 |
Q |
| |
|
||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||| || || | |
|
|
| T |
23224555 |
gaaagcgtgaacctcactcaagctttgttgaagctttccaacaacataatatcacggatgatgttgagcattgagagctcaggaacggatagtcaggctg |
23224456 |
T |
|
| Q |
437 |
aacaagtaagggctttggttcgcgaggtaacacaaatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttt |
536 |
Q |
| |
|
|||| | ||| | |||||||| || || || |||||||| || |||||||| |||| |||||||||||| ||| ||||||||| ||||| |||||| | |
|
|
| T |
23224455 |
aacaggcgaggacgttggttcgagatgtgacccaaattttcggggaatttaacatttcggattttataggattttgcaagaacttggactttcaaggtct |
23224356 |
T |
|
| Q |
537 |
taaaaagagggccttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaag |
627 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||||||||| |||| ||| | |||| ||||||||| ||| | ||||| |||||||| |
|
|
| T |
23224355 |
caaaaagagggcattggatatacataagaggtatgatgcttttctggagaagttaatttgtgatcgtgaggaatcacgaaggaaagccaag |
23224265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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