View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19982_low_3 (Length: 400)
Name: NF19982_low_3
Description: NF19982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19982_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 184 - 384
Target Start/End: Original strand, 45545540 - 45545740
Alignment:
| Q |
184 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
283 |
Q |
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| T |
45545540 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
45545639 |
T |
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| Q |
284 |
tgaaagttgctaacaaaaatttcaaaactgtggcaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
383 |
Q |
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| T |
45545640 |
tgaaagttgctaacaaaaatttcaaaactgtggtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
45545739 |
T |
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| Q |
384 |
t |
384 |
Q |
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| T |
45545740 |
t |
45545740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 45545359 - 45545457
Alignment:
| Q |
11 |
aagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgaccgatgaagatgtaaggaacaggatatttga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
45545359 |
aagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatgtaaggaacagaatatttga |
45545457 |
T |
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