View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19982_low_4 (Length: 350)
Name: NF19982_low_4
Description: NF19982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19982_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 2331691 - 2332009
Alignment:
| Q |
15 |
ataattctaagaaacaacaatgatcaccaccaataatggtgaaaaacagttaaaagggaaaaccaacacaagaaaggagaatacttaggtatcgttccct |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331691 |
ataatactaagaaacaacaatgatcaccaccaat---ggtgaaaaacagttaaaagggaaaaccaacacaagaaaggagaatacttaggtatcgttccct |
2331787 |
T |
|
| Q |
115 |
gcacactattcgctcagttcttcacatgaatgtacctaaacattgtcgtttaaaaatgatttggattaatggcggttgggcagttttaataatttatttt |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331788 |
acacactattcgctcagtttttcacatgaatgcacctaaacattgtcgtttaaaaatgatttggattaatggcggttgggcagttttaataatttatttt |
2331887 |
T |
|
| Q |
215 |
gtaactatagttatgaaccggatgaacactagctattcgaagaactgcacataagtatttttgcaagagaaaacctctaccaaacaacctaaagagaagg |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331888 |
gtaactaaagttatgaaccggatgaacactagctattcgaagaactgcacataagtatttttgcaagagaaaacctctaccaaacaacctaaagagaagg |
2331987 |
T |
|
| Q |
315 |
taaaactagtaatacaatatat |
336 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2331988 |
taaaactagtaatacaatatat |
2332009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University