View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19982_low_5 (Length: 333)
Name: NF19982_low_5
Description: NF19982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19982_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 35374794 - 35374500
Alignment:
| Q |
17 |
accaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35374794 |
accaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatg |
35374695 |
T |
|
| Q |
117 |
gtgtttatgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaatagtgacatgaggtattcgtatcttcgtgccttatcagca |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35374694 |
gtgtttctgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaatagtgacgtgaggtattcgtatcttcgtgccttatcagca |
35374595 |
T |
|
| Q |
217 |
ttgtttgaaggcgagttagaatccagtggataagtagtacgagaaacagcagaaccaatattatgatggggaagaagtttgaagaaaatagggag |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35374594 |
ttgtttgaaggctagttagaatccagtggataagtagtacgagaaacagcagaaccaatattatgatggggaagaagtgtgaagaaaatagggag |
35374500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 35381036 - 35380949
Alignment:
| Q |
29 |
attgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatg |
116 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| || ||||||| | |||||| ||||| ||||||| ||| || ||||| |
|
|
| T |
35381036 |
attgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagcgttgtagacggaggagaggatg |
35380949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 30811986 - 30811863
Alignment:
| Q |
51 |
caaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgtggacga |
150 |
Q |
| |
|
||||||||||| | |||| | || |||| |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
30811986 |
caaataacacagtaacgtgcaaatgcttcttttgcatacttagcggtgtagatggagaaggagatggtatttatgaccaactcgtctaagttatgaacga |
30811887 |
T |
|
| Q |
151 |
catgtgtttgcaattggtcgttag |
174 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30811886 |
catgtgtttgcagttggtcgttag |
30811863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University