View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19982_low_6 (Length: 330)
Name: NF19982_low_6
Description: NF19982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19982_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 31202692 - 31202990
Alignment:
| Q |
18 |
ctatggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatatatacatggactag |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202692 |
ctatggaagaaagccagctccagtaatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatatatacatggactag |
31202791 |
T |
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| Q |
118 |
taatcaactatctatagtaatggtcctccttagttgtcnnnnnnnnnncaatggggtatttaatttgttttttgtttcagcctgatgtaactgcaccagg |
217 |
Q |
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| T |
31202792 |
taatcaactatctatagtaatggtcttccttagttgtcttttttttt-caatggggtatttaatttgttttttgtttcagcctgatgtaactgcaccagg |
31202890 |
T |
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| Q |
218 |
tgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcgcaacaattttccattcaatgtactacaaggaacttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202891 |
tgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaaaaacagacaatcgcaacaattttccattcaatgtactacaaggaacttct |
31202990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 31062210 - 31062074
Alignment:
| Q |
181 |
tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg |
280 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||| ||||||||||||| |
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| T |
31062210 |
tttgttttttgtttcagcctgatgtaactgcacctggtgtgaacatacttgctgcctattcattgtttgctagtgcatctaatttactaacagacaatcg |
31062111 |
T |
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| Q |
281 |
caacaattttccattcaatgtactacaaggaacttct |
317 |
Q |
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| T |
31062110 |
ccgaggttttcccttcaatgtaatgcaaggaacttct |
31062074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 31049887 - 31049751
Alignment:
| Q |
181 |
tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg |
280 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||| |
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| T |
31049887 |
tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcg |
31049788 |
T |
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| Q |
281 |
caacaattttccattcaatgtactacaaggaacttct |
317 |
Q |
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| T |
31049787 |
tcgaggttttccattcaatatacaacaaggaacttct |
31049751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 31107377 - 31107245
Alignment:
| Q |
185 |
ttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcgcaac |
284 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| ||| |
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| T |
31107377 |
tttttcgtttcagcctgatgtaactgcgccaggtgtgaacatactcgctgcctattcattgtttgcaagtgcatctaatttaataacagacactcgtcga |
31107278 |
T |
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| Q |
285 |
aattttccattcaatgtactacaaggaacttct |
317 |
Q |
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| T |
31107277 |
ggttttccattcaatgtaatgcaaggaacttct |
31107245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 31144959 - 31144823
Alignment:
| Q |
181 |
tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg |
280 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||| |
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| T |
31144959 |
tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcg |
31144860 |
T |
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| Q |
281 |
caacaattttccattcaatgtactacaaggaacttct |
317 |
Q |
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||||||||||||| ||| ||||||||||||| |
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| T |
31144859 |
tcgaggttttccattcaatatacaacaaggaacttct |
31144823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 31162783 - 31162647
Alignment:
| Q |
181 |
tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg |
280 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||| |
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| T |
31162783 |
tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcg |
31162684 |
T |
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| Q |
281 |
caacaattttccattcaatgtactacaaggaacttct |
317 |
Q |
| |
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||||||||||||| ||| ||||||||||||| |
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| T |
31162683 |
tcgaggttttccattcaatatacaacaaggaacttct |
31162647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 31145116 - 31145031
Alignment:
| Q |
20 |
atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||| |
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| T |
31145116 |
atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaagttcaaccatatatactcaaggtgtttata |
31145031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 31162940 - 31162855
Alignment:
| Q |
20 |
atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||||| |||| |
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| T |
31162940 |
atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaatcaagttcaaccatatatactcaaggtgtttata |
31162855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 31050041 - 31049959
Alignment:
| Q |
23 |
gaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata |
105 |
Q |
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| T |
31050041 |
gaagaaaaccagctccagttatggcttcattctcatctagaggaccaaatcaagttcagccatatatactcaaggtgtttata |
31049959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 31107533 - 31107456
Alignment:
| Q |
23 |
gaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgt |
100 |
Q |
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| T |
31107533 |
gaagaaagccagctccagttatggcttcctactcttctagaggaccaaataaagttcaaccatcaatactcaaggtgt |
31107456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 31062529 - 31062450
Alignment:
| Q |
21 |
tggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgt |
100 |
Q |
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| T |
31062529 |
tggaagaaagccagctccagttatggcttcattctcatctagaggtccaaatcaagttcaaccatatatactcaaggtgt |
31062450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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