View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19982_low_7 (Length: 289)
Name: NF19982_low_7
Description: NF19982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19982_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 36771472 - 36771342
Alignment:
| Q |
1 |
ctctatatccatttcactacccaattctttcctaaccttttatgtaattttcctcgtgaaaagtaaataataaaaatagatgatacaatcttttttgaca |
100 |
Q |
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| T |
36771472 |
ctctatatccatttcactacccaattctttcctaaccttttatgtaattttcctcgtgaaaagtaaataataaaaatagatgatacaatcttttttgaca |
36771373 |
T |
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| Q |
101 |
gcaaaaatagatgaggcaattgttattcaag |
131 |
Q |
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| T |
36771372 |
gcaaaaatagatgagacaattgttattcaag |
36771342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 36771350 - 36771229
Alignment:
| Q |
161 |
ttattcaagataatagtagcgattcttcacacatgtattcatactcattacaaacactgcatatatgctatcctgtgcattatttccttgcagagttata |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36771350 |
ttattcaagataatagtagcgattcttcacacatgtattcatactcattacaaacactgcatatatgctatcttgtgcattatttccttgcagagttata |
36771251 |
T |
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| Q |
261 |
caaaattcaagtaaaagaactt |
282 |
Q |
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| T |
36771250 |
caaaattcaagtaaaagaactt |
36771229 |
T |
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