View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19982_low_8 (Length: 271)
Name: NF19982_low_8
Description: NF19982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19982_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 25818236 - 25818435
Alignment:
| Q |
1 |
ccaattgatccatccatacctggcatcaaaaatgggatatatagcacagatgaatttgggatgtttgcattcaaaggcaagccttgtttaagggcttatc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25818236 |
ccaattgatccatccatacctggcataaaaaatgagatatatagcacagatgaatttaggatgtttgcattcaaagggaagccttgtttaagggcttatc |
25818335 |
T |
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| Q |
101 |
ctcatgattggaccaagtgccactttgtccaccccggggaaaacgcaaggcggcgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagt |
200 |
Q |
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| T |
25818336 |
ctcatgattggaccaagtgccactttgtccaccccggggaaaacgcaaggcgccgtgatctgaggaaatatcattacacctgtgtccctttgtcctgagt |
25818435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 25812571 - 25812758
Alignment:
| Q |
1 |
ccaattgatccatccatacctggcatcaaaaatgggatatatagcacagatgaatttgggatgtttgcattcaaaggcaagccttgtttaagggcttatc |
100 |
Q |
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|||||| |||||||| |||||| ||| || |||| ||||||||| |||||||||||| |||||||| ||||||||| |||||||||| ||||| |||| |
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| T |
25812571 |
ccaattaatccatccctacctgacataaacaatgagatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaaggg-ttatt |
25812669 |
T |
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| Q |
101 |
ctcatgattggaccaagtgccactttgtccaccccggggaaaacgcaaggcggcgtgatccgaggaaatatcattacacctgtgtccctt |
190 |
Q |
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| T |
25812670 |
ctcatgattggactgagtgcccctttgttcatccagggg-aaacgcaaggcgccgtgattcgaggaaatatcattacacatgtgtccctt |
25812758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 33647771 - 33647957
Alignment:
| Q |
4 |
attgatccatccatacctggcatcaaaaatgggatatatagcacagatgaatttgggatgtttgcattcaaaggcaagccttgtttaagggcttatcctc |
103 |
Q |
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|||||||||||| |||||| ||| || ||||| |||||||| |||||||||||| |||||||| ||||||||| |||||||||| |||||||||| ||| |
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| T |
33647771 |
attgatccatccctacctgacataaagaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctc |
33647870 |
T |
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| Q |
104 |
atgattggaccaagtgccactttgtccaccccggggaaaacgcaaggcggcgtgatccgaggaaatatcattacacctgtgtccctt |
190 |
Q |
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|||||||||| |||||| |||||| || || ||||| || |||||||| || |||| |||||||| ||||||||| |||||||||| |
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| T |
33647871 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgcgatctgaggaaatgtcattacacatgtgtccctt |
33647957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 30122226 - 30122394
Alignment:
| Q |
31 |
aatgggatatatagcacagatgaatttgggatgtttgcattcaaaggcaagccttgtttaagggcttatcctcatgattggaccaagtgccactttgtcc |
130 |
Q |
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|||||||||||||| || ||||| ||| |||||| | ||||||||| |||||||||| |||||||||| |||||||||||||| |||| | ||||| | |
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| T |
30122226 |
aatgggatatatagtaccgatgagtttaggatgtatacattcaaagtgaagccttgttcaagggcttattctcatgattggaccgagtgtccttttgttc |
30122325 |
T |
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| Q |
131 |
accccggggaaaacgcaaggcggcgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagt |
200 |
Q |
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| || |||||||| |||||||| || ||||| |||||||||||||| | ||| ||||| ||||||||||| |
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| T |
30122326 |
atccaggggaaaatgcaaggcgacgcgatccaaggaaatatcattatagctgcgtccc-ttgtcctgagt |
30122394 |
T |
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